[HTML][HTML] Genetic diversity on the sex chromosomes

MAW Sayres - Genome biology and evolution, 2018 - ncbi.nlm.nih.gov
Levels and patterns of genetic diversity can provide insights into a population's history. In
species with sex chromosomes, differences between genomic regions with unique …

Genetic diversity on the sex chromosomes

MA Wilson Sayres - Genome Biology and Evolution, 2018 - academic.oup.com
Levels and patterns of genetic diversity can provide insights into a population's history. In
species with sex chromosomes, differences between genomic regions with unique …

Codon usage bias in animals: disentangling the effects of natural selection, effective population size, and GC-biased gene conversion

N Galtier, C Roux, M Rousselle… - Molecular biology …, 2018 - academic.oup.com
Selection on codon usage bias is well documented in a number of microorganisms. Whether
codon usage is also generally shaped by natural selection in large organisms, despite their …

[HTML][HTML] Patterns of cross-contamination in a multispecies population genomic project: detection, quantification, impact, and solutions

M Ballenghien, N Faivre, N Galtier - BMC biology, 2017 - Springer
Background Contamination is a well-known but often neglected problem in molecular
biology. Here, we investigated the prevalence of cross-contamination among 446 samples …

Support for faster and more adaptive Z chromosome evolution in two divergent lepidopteran lineages

AJ Mongue, ME Hansen, JR Walters - Evolution, 2022 - academic.oup.com
The rateof divergence for Z or X chromosomes is usually observed to be greater than
autosomes, but the proposed evolutionary causes for this pattern vary, as do empirical …

[HTML][HTML] Is adaptation limited by mutation? A timescale-dependent effect of genetic diversity on the adaptive substitution rate in animals

M Rousselle, P Simion, MK Tilak, E Figuet… - PLoS …, 2020 - journals.plos.org
Whether adaptation is limited by the beneficial mutation supply is a long-standing question
of evolutionary genetics, which is more generally related to the determination of the adaptive …

[HTML][HTML] Unraveling the complex evolutionary history of lepidopteran chromosomes through ancestral chromosome reconstruction and novel chromosome …

X Chen, Z Wang, C Zhang, J Hu, Y Lu, H Zhou, Y Mei… - BMC biology, 2023 - Springer
Background Lepidoptera is one of the most species-rich animal groups, with substantial
karyotype variations among species due to chromosomal rearrangements. Knowledge of the …

Evolutionary dynamics of sex chromosomes of paleognathous birds

L Xu, SY Wa Sin, P Grayson… - Genome Biology and …, 2019 - academic.oup.com
Standard models of sex chromosome evolution propose that recombination suppression
leads to the degeneration of the heterogametic chromosome, as is seen for the Y …

Slower-X: reduced efficiency of selection in the early stages of X chromosome evolution

A Mrnjavac, KA Khudiakova, NH Barton… - Evolution …, 2023 - academic.oup.com
Differentiated X chromosomes are expected to have higher rates of adaptive divergence
than autosomes, if new beneficial mutations are recessive (the “faster-X effect”), largely …

[HTML][HTML] GC-biased gene conversion conceals the prediction of the nearly neutral theory in avian genomes

P Bolívar, L Guéguen, L Duret, H Ellegren, CF Mugal - Genome Biology, 2019 - Springer
Background The nearly neutral theory of molecular evolution predicts that the efficacy of
natural selection increases with the effective population size. This prediction has been …