Genomic selection in plant breeding: Key factors shaping two decades of progress

A Alemu, J Åstrand, OA Montesinos-Lopez… - Molecular Plant, 2024 - cell.com
Genomic selection, the application of genomic prediction (GP) models to select candidate
individuals, has significantly advanced in the past two decades, effectively accelerating …

Genomic selection in sugarcane: Current status and future prospects

C Mahadevaiah, C Appunu, K Aitken… - Frontiers in Plant …, 2021 - frontiersin.org
Sugarcane is a C4 and agro-industry-based crop with a high potential for biomass
production. It serves as raw material for the production of sugar, ethanol, and electricity …

A comparison of methods for training population optimization in genomic selection

J Fernández-González, D Akdemir… - Theoretical and Applied …, 2023 - Springer
Abstract Key message Maximizing CDmean and Avg_GRM_self were the best criteria for
training set optimization. A training set size of 50–55%(targeted) or 65–85%(untargeted) is …

Training set optimization for sparse phenotyping in genomic selection: A conceptual overview

J Isidro y Sánchez, D Akdemir - Frontiers in Plant Science, 2021 - frontiersin.org
Genomic selection (GS) is becoming an essential tool in breeding programs due to its role in
increasing genetic gain per unit time. The design of the training set (TRS) in GS is one of the …

Development of whole‐genome prediction models to increase the rate of genetic gain in intermediate wheatgrass (Thinopyrum intermedium) breeding

J Crain, A Haghighattalab, L DeHaan… - The Plant …, 2021 - Wiley Online Library
The development of perennial grain crops is driven by the vision of simultaneous food
production and enhanced ecosystem services. Typically, perennial crops like intermediate …

Building a calibration set for genomic prediction, characteristics to be considered, and optimization approaches

S Rio, A Charcosset, T Mary-Huard, L Moreau… - Genomic prediction of …, 2022 - Springer
The efficiency of genomic selection strongly depends on the prediction accuracy of the
genetic merit of candidates. Numerous papers have shown that the composition of the …

Improving the accuracy of genomic prediction in dairy cattle using the biologically annotated neural networks framework

X Wang, S Shi, MY Ali Khan, Z Zhang… - Journal of Animal Science …, 2024 - Springer
Background Biologically annotated neural networks (BANNs) are feedforward Bayesian
neural network models that utilize partially connected architectures based on SNP-set …

Portability of genomic predictions trained on sparse factorial designs across two maize silage breeding cycles

A Lorenzi, C Bauland, S Pin, D Madur… - Theoretical and Applied …, 2024 - Springer
Key message We validated the efficiency of genomic predictions calibrated on sparse
factorial training sets to predict the next generation of hybrids and tested different strategies …

Maximizing efficiency in sunflower breeding through historical data optimization

J Fernández-González, B Haquin, E Combes… - Plant methods, 2024 - Springer
Genomic selection (GS) has become an increasingly popular tool in plant breeding
programs, propelled by declining genotyping costs, an increase in computational power …

Genomic selection for enhanced stress tolerance in maize

HC Lohithaswa, SM Shreekanth, SK Banakara… - Next-Generation Plant …, 2022 - Springer
Maize is the fastest-growing cereal in the world and serves as the most significant
component of the global coarse grain trade. Interestingly, in addition to being a prime …