Computer aided drug design: success and limitations

M Hassan Baig, K Ahmad, S Roy… - Current …, 2016 - ingentaconnect.com
Over the last few decades, computer-aided drug design has emerged as a powerful
technique playing a crucial role in the development of new drug molecules. Structure-based …

Virtual screening strategies in drug discovery: a critical review

A Lavecchia, C Di Giovanni - Current medicinal chemistry, 2013 - ingentaconnect.com
Virtual screening (VS) is a powerful technique for identifying hit molecules as starting points
for medicinal chemistry. The number of methods and softwares which use the ligand and …

AlphaFold, allosteric, and orthosteric drug discovery: Ways forward

R Nussinov, M Zhang, Y Liu, H Jang - Drug discovery today, 2023 - Elsevier
Highlights•AlphaFold models have rigid protein structures.•Advanced deep algorithms fed
relevant data can accurately predict structures.•Algorithmic advances can harness …

Recognizing pitfalls in virtual screening: a critical review

T Scior, A Bender, G Tresadern… - Journal of chemical …, 2012 - ACS Publications
The aim of virtual screening (VS) is to identify bioactive compounds through computational
means, by employing knowledge about the protein target (structure-based VS) or known …

Computer-aided drug discovery and development (CADDD): in silico-chemico-biological approach

IM Kapetanovic - Chemico-biological interactions, 2008 - Elsevier
It is generally recognized that drug discovery and development are very time and resources
consuming processes. There is an ever growing effort to apply computational power to the …

Virtual screening in drug discovery-a computational perspective

AS Reddy, SP Pati, PP Kumar… - Current Protein and …, 2007 - ingentaconnect.com
Virtual screening emerged as an important tool in our quest to access novel drug like
compounds. There are a wide range of comparable and contrasting methodological …

Artificial intelligence approaches for rational drug design and discovery

W Duch, K Swaminathan… - Current pharmaceutical …, 2007 - ingentaconnect.com
Pattern recognition, machine learning and artificial intelligence approaches play an
increasingly important role in rational drug design, screening and identification of candidate …

Extra precision docking, free energy calculation and molecular dynamics simulation studies of CDK2 inhibitors

SK Tripathi, R Muttineni, SK Singh - Journal of theoretical biology, 2013 - Elsevier
Molecular docking, free energy calculation and molecular dynamics (MD) simulation studies
have been performed, to explore the putative binding modes of 3, 5-diaminoindazoles …

Recognition of functional sites in protein structures

A Shulman-Peleg, R Nussinov, HJ Wolfson - Journal of molecular biology, 2004 - Elsevier
Recognition of regions on the surface of one protein, that are similar to a binding site of
another is crucial for the prediction of molecular interactions and for functional …

Integrating virtual screening and combinatorial chemistry for accelerated drug discovery

F López-Vallejo, T Caulfield… - … Chemistry & High …, 2011 - ingentaconnect.com
Virtual screening is increasingly being used in drug discovery programs with a growing
number of successful applications. Experimental methodologies developed to speed up the …