From structure and dynamics to biomolecular functions: The ubiquitous role of solvent in biology
Biological activity requires a solvent that can provide a suitable environment, which satisfies
the twin need for stability and the ability to change. Among all the solvents water plays the …
the twin need for stability and the ability to change. Among all the solvents water plays the …
[HTML][HTML] Ions' motion in water
P Banerjee, B Bagchi - The Journal of chemical physics, 2019 - pubs.aip.org
Over the decades, a great deal of attention has been focused on the solvation and transport
properties of small rigid monatomic ions such as Na+, K+, Li+, Cl−, and Br− due to their …
properties of small rigid monatomic ions such as Na+, K+, Li+, Cl−, and Br− due to their …
Structural stability of insulin oligomers and protein association–dissociation processes: Free energy landscape and universal role of water
Association and dissociation of proteins are important biochemical events. In this Feature
Article, we analyze the available studies of these processes for insulin oligomers in aqueous …
Article, we analyze the available studies of these processes for insulin oligomers in aqueous …
Unusual similarity of DNA solvation dynamics in high-salinity crowding with divalent cations of varying concentrations
Double-stranded DNA bears the highest linear negative charge density (2e− per base-pair)
among all biopolymers, leading to strong interactions with cations and dipolar water …
among all biopolymers, leading to strong interactions with cations and dipolar water …
Probing adaptation of hydration and protein dynamics to temperature
LC Doan, JN Dahanayake, KR Mitchell-Koch… - Acs Omega, 2022 - ACS Publications
Protein dynamics is strongly influenced by the surrounding environment and physiological
conditions. Here we employ broadband megahertz-to-terahertz spectroscopy to explore the …
conditions. Here we employ broadband megahertz-to-terahertz spectroscopy to explore the …
[HTML][HTML] Long-range DNA-water interactions
DNA functions only in aqueous environments and adopts different conformations depending
on the hydration level. The dynamics of hydration water and hydrated DNA leads to rotating …
on the hydration level. The dynamics of hydration water and hydrated DNA leads to rotating …
Molecular picture of the effect of cosolvent crowding on ligand binding and dispersed solvation dynamics in G-quadruplex DNA
Understanding molecular interactions and dynamics of proteins and DNA in a cell-like
crowded environment is crucial for predicting their functions within the cell. Noncanonical G …
crowded environment is crucial for predicting their functions within the cell. Noncanonical G …
Bimodal 1/f Noise and Anticorrelation between DNA-Water and DNA-Ion Energy Fluctuations
The coupling between the conformational fluctuations of DNA and its surrounding
environment, consisting of water and ions in solution, remains poorly understood and …
environment, consisting of water and ions in solution, remains poorly understood and …
[图书][B] Nonequilibrium Statistical Mechanics: An Introduction with Applications
B Bagchi - 2024 - taylorfrancis.com
Nonequilibrium statistical mechanics (NESM), practically synonymous with time-dependent
statistical mechanics (TDSM), is a beautiful and profound subject, vast in scope, diverse in …
statistical mechanics (TDSM), is a beautiful and profound subject, vast in scope, diverse in …
DNA photoionization: from high to low energies
E Balanikas, D Markovitsi - 2021 - books.rsc.org
Absorption of one or more ultraviolet (UV) photons directly by DNA may lead to its ionization:
an electron is ejected, generating an electron hole (radical cation) on the nucleic acid. 1–3 …
an electron is ejected, generating an electron hole (radical cation) on the nucleic acid. 1–3 …