Single‐cell analysis using droplet microfluidics

K Matuła, F Rivello, WTS Huck - Advanced Biosystems, 2020 - Wiley Online Library
Droplet microfluidics has revolutionized the study of single cells. The ability to
compartmentalize cells within picoliter droplets in microfluidic devices has opened up a wide …

Mapping the epigenetic modifications of DNA and RNA

LY Zhao, J Song, Y Liu, CX Song, C Yi - Protein & cell, 2020 - academic.oup.com
Over 17 and 160 types of chemical modifications have been identified in DNA and RNA,
respectively. The interest in understanding the various biological functions of DNA and RNA …

Absolute quantification of single-base m6A methylation in the mammalian transcriptome using GLORI

C Liu, H Sun, Y Yi, W Shen, K Li, Y Xiao, F Li, Y Li… - Nature …, 2023 - nature.com
Abstract N 6-methyladenosine (m6A) is the most abundant RNA modification in mammalian
cells and the best-studied epitranscriptomic mark. Despite the development of various tools …

Bisulfite-free direct detection of 5-methylcytosine and 5-hydroxymethylcytosine at base resolution

Y Liu, P Siejka-Zielińska, G Velikova, Y Bi, F Yuan… - Nature …, 2019 - nature.com
Bisulfite sequencing has been the gold standard for mapping DNA modifications including 5-
methylcytosine (5mC) and 5-hydroxymethylcytosine (5hmC) for decades,,–. However, this …

The roles of human DNA methyltransferases and their isoforms in shaping the epigenome

H Gujar, DJ Weisenberger, G Liang - Genes, 2019 - mdpi.com
A DNA sequence is the hard copy of the human genome and it is a driving force in
determining the physiological processes in an organism. Concurrently, the chemical …

Systematic benchmarking of tools for CpG methylation detection from nanopore sequencing

ZWS Yuen, A Srivastava, R Daniel, D McNevin… - Nature …, 2021 - nature.com
DNA methylation plays a fundamental role in the control of gene expression and genome
integrity. Although there are multiple tools that enable its detection from Nanopore …

Recent advances in the detection of base modifications using the Nanopore sequencer

L Xu, M Seki - Journal of human genetics, 2020 - nature.com
DNA and RNA modifications have important functions, including the regulation of gene
expression. Existing methods based on short-read sequencing for the detection of …

[HTML][HTML] Deciphering the biodesulfurization pathway employing marine mangrove Bacillus aryabhattai strain NM1-A2 according to whole genome sequencing and …

M Kashif, Y Sang, S Mo, S ur Rehman, S Khan… - Genomics, 2023 - Elsevier
In the biogeochemical cycle, sulfur oxidation plays a vital role and is typically referred to as
the elemental sulfur or reductive sulfide oxidation process. This study aimed to characterize …

Subtraction-free and bisulfite-free specific sequencing of 5-methylcytosine and its oxidized derivatives at base resolution

Y Liu, Z Hu, J Cheng, P Siejka-Zielińska, J Chen… - Nature …, 2021 - nature.com
Although various methods have been developed for sequencing cytosine modifications, it is
still challenging for specific and quantitative sequencing of individual modification at base …

Enzymatic synthesis of base-functionalized nucleic acids for sensing, cross-linking, and modulation of protein–DNA binding and transcription

M Hocek - Accounts of Chemical Research, 2019 - ACS Publications
Conspectus Protein–DNA interactions are important in replication, transcription, repair, as
well as epigenetic modifications of DNA, which involve methylation and demethylation of …