Single‐cell analysis using droplet microfluidics
Droplet microfluidics has revolutionized the study of single cells. The ability to
compartmentalize cells within picoliter droplets in microfluidic devices has opened up a wide …
compartmentalize cells within picoliter droplets in microfluidic devices has opened up a wide …
Mapping the epigenetic modifications of DNA and RNA
Over 17 and 160 types of chemical modifications have been identified in DNA and RNA,
respectively. The interest in understanding the various biological functions of DNA and RNA …
respectively. The interest in understanding the various biological functions of DNA and RNA …
Absolute quantification of single-base m6A methylation in the mammalian transcriptome using GLORI
C Liu, H Sun, Y Yi, W Shen, K Li, Y Xiao, F Li, Y Li… - Nature …, 2023 - nature.com
Abstract N 6-methyladenosine (m6A) is the most abundant RNA modification in mammalian
cells and the best-studied epitranscriptomic mark. Despite the development of various tools …
cells and the best-studied epitranscriptomic mark. Despite the development of various tools …
Bisulfite-free direct detection of 5-methylcytosine and 5-hydroxymethylcytosine at base resolution
Y Liu, P Siejka-Zielińska, G Velikova, Y Bi, F Yuan… - Nature …, 2019 - nature.com
Bisulfite sequencing has been the gold standard for mapping DNA modifications including 5-
methylcytosine (5mC) and 5-hydroxymethylcytosine (5hmC) for decades,,–. However, this …
methylcytosine (5mC) and 5-hydroxymethylcytosine (5hmC) for decades,,–. However, this …
The roles of human DNA methyltransferases and their isoforms in shaping the epigenome
A DNA sequence is the hard copy of the human genome and it is a driving force in
determining the physiological processes in an organism. Concurrently, the chemical …
determining the physiological processes in an organism. Concurrently, the chemical …
Systematic benchmarking of tools for CpG methylation detection from nanopore sequencing
DNA methylation plays a fundamental role in the control of gene expression and genome
integrity. Although there are multiple tools that enable its detection from Nanopore …
integrity. Although there are multiple tools that enable its detection from Nanopore …
Recent advances in the detection of base modifications using the Nanopore sequencer
L Xu, M Seki - Journal of human genetics, 2020 - nature.com
DNA and RNA modifications have important functions, including the regulation of gene
expression. Existing methods based on short-read sequencing for the detection of …
expression. Existing methods based on short-read sequencing for the detection of …
[HTML][HTML] Deciphering the biodesulfurization pathway employing marine mangrove Bacillus aryabhattai strain NM1-A2 according to whole genome sequencing and …
In the biogeochemical cycle, sulfur oxidation plays a vital role and is typically referred to as
the elemental sulfur or reductive sulfide oxidation process. This study aimed to characterize …
the elemental sulfur or reductive sulfide oxidation process. This study aimed to characterize …
Subtraction-free and bisulfite-free specific sequencing of 5-methylcytosine and its oxidized derivatives at base resolution
Although various methods have been developed for sequencing cytosine modifications, it is
still challenging for specific and quantitative sequencing of individual modification at base …
still challenging for specific and quantitative sequencing of individual modification at base …
Enzymatic synthesis of base-functionalized nucleic acids for sensing, cross-linking, and modulation of protein–DNA binding and transcription
M Hocek - Accounts of Chemical Research, 2019 - ACS Publications
Conspectus Protein–DNA interactions are important in replication, transcription, repair, as
well as epigenetic modifications of DNA, which involve methylation and demethylation of …
well as epigenetic modifications of DNA, which involve methylation and demethylation of …