[HTML][HTML] Multi-omics approaches for biomarker discovery in early ovarian cancer diagnosis

Y Xiao, M Bi, H Guo, M Li - EBioMedicine, 2022 - thelancet.com
Ovarian cancer (OC) is a heterogeneous disease with the highest mortality rate and the
poorest prognosis among gynecological malignancies. Because of the absence of specific …

Aberrant RNA splicing in cancer; expression changes and driver mutations of splicing factor genes

A Sveen, S Kilpinen, A Ruusulehto, RA Lothe… - Oncogene, 2016 - nature.com
Alternative splicing is a widespread process contributing to structural transcript variation and
proteome diversity. In cancer, the splicing process is commonly disrupted, resulting in both …

A comprehensive assessment of RNA-seq accuracy, reproducibility and information content by the Sequencing Quality Control Consortium

Nature biotechnology, 2014 - nature.com
We present primary results from the Sequencing Quality Control (SEQC) project,
coordinated by the US Food and Drug Administration. Examining Illumina HiSeq, Life …

Non-coding RNAs in cardiovascular cell biology and atherosclerosis

F Fasolo, K Di Gregoli, L Maegdefessel… - Cardiovascular …, 2019 - academic.oup.com
Atherosclerosis underlies the predominant number of cardiovascular diseases and remains
a leading cause of morbidity and mortality worldwide. The development, progression and …

The concordance between RNA-seq and microarray data depends on chemical treatment and transcript abundance

C Wang, B Gong, PR Bushel, J Thierry-Mieg… - Nature …, 2014 - nature.com
The concordance of RNA-sequencing (RNA-seq) with microarrays for genome-wide
analysis of differential gene expression has not been rigorously assessed using a range of …

Integrative genomic analyses reveal clinically relevant long noncoding RNAs in human cancer

Z Du, T Fei, RGW Verhaak, Z Su, Y Zhang… - Nature structural & …, 2013 - nature.com
Despite growing appreciation of the importance of long noncoding RNAs (lncRNAs) in
normal physiology and disease, our knowledge of cancer-related lncRNAs remains limited …

A comprehensive time-course–based multicohort analysis of sepsis and sterile inflammation reveals a robust diagnostic gene set

TE Sweeney, A Shidham, HR Wong… - Science translational …, 2015 - science.org
Although several dozen studies of gene expression in sepsis have been published,
distinguishing sepsis from a sterile systemic inflammatory response syndrome (SIRS) is still …

Next-generation sequencing in the clinic: promises and challenges

J Xuan, Y Yu, T Qing, L Guo, L Shi - Cancer letters, 2013 - Elsevier
The advent of next generation sequencing (NGS) technologies has revolutionized the field
of genomics, enabling fast and cost-effective generation of genome-scale sequence data …

[HTML][HTML] Viral-human chimeric transcript predisposes risk to liver cancer development and progression

CC Lau, T Sun, AKK Ching, M He, JW Li, AM Wong… - Cancer cell, 2014 - cell.com
The mutagenic effect of hepatitis B (HBV) integration in predisposing risk to hepatocellular
carcinoma (HCC) remains elusive. In this study, we performed transcriptome sequencing of …

[HTML][HTML] A look into retinal organoids: methods, analytical techniques, and applications

TAV Afanasyeva, JC Corral-Serrano, A Garanto… - Cellular and Molecular …, 2021 - Springer
Inherited retinal diseases (IRDs) cause progressive loss of light-sensitive photoreceptors in
the eye and can lead to blindness. Gene-based therapies for IRDs have shown remarkable …