Structural study of heterogeneous biological samples by cryoelectron microscopy and image processing

HE White, A Ignatiou, DK Clare… - BioMed research …, 2017 - Wiley Online Library
In living organisms, biological macromolecules are intrinsically flexible and naturally exist in
multiple conformations. Modern electron microscopy, especially at liquid nitrogen …

[HTML][HTML] Structural mechanisms of hexameric helicase loading, assembly, and unwinding

MA Trakselis - F1000Research, 2016 - ncbi.nlm.nih.gov
Hexameric helicases control both the initiation and the elongation phase of DNA replication.
The toroidal structure of these enzymes provides an inherent challenge in the opening and …

Structural and functional analysis of the nucleotide and DNA binding activities of the human PIF1 helicase

S Dehghani-Tafti, V Levdikov, AA Antson… - Nucleic acids …, 2019 - academic.oup.com
Pif1 is a multifunctional helicase and DNA processing enzyme that has roles in genome
stability. The enzyme is conserved in eukaryotes and also found in some prokaryotes. The …

Unwinding of a DNA replication fork by a hexameric viral helicase

A Javed, B Major, JA Stead, CM Sanders… - Nature …, 2021 - nature.com
Hexameric helicases are motor proteins that unwind double-stranded DNA (dsDNA) during
DNA replication but how they are optimised for strand separation is unclear. Here we …

Contacts and context that regulate DNA helicase unwinding and replisome progression

HM Perera, MS Behrmann, JM Hoang, WC Griffin… - The Enzymes, 2019 - Elsevier
Hexameric DNA helicases involved in the separation of duplex DNA at the replication fork
have a universal architecture but have evolved from two separate protein families. The …

Domain organization of vaccinia virus helicase-primase D5

S Hutin, WL Ling, A Round, G Effantin, S Reich… - Journal of …, 2016 - Am Soc Microbiol
Poxviridae are viruses with a large linear double-stranded DNA genome coding for up to
250 open reading frames and a fully cytoplasmic replication. The double-stranded DNA …

Viro3D: a comprehensive database of virus protein structure predictions

U Litvin, S Lytras, A Jack, DL Robertson, J Grove… - bioRxiv, 2024 - biorxiv.org
Viruses are intracellular parasites of organisms from all domains of life. They infect and
cause disease in humans, animals and plants but also play crucial roles in the ecology of …

Ring-shaped replicative helicase encircles double-stranded DNA during unwinding

S Joo, BH Chung, M Lee, TH Ha - Nucleic Acids Research, 2019 - academic.oup.com
Ring-shaped replicative helicases are hexameric and play a key role in cellular DNA
replication. Despite their importance, our understanding of the unwinding mechanism of …

Structural based analyses of the JC virus T-antigen F258L mutant provides evidence for DNA dependent conformational changes in the C-termini of polyomavirus …

G Meinke, PJ Phelan, J Shin, D Gagnon… - PLoS …, 2016 - journals.plos.org
The replication of human polyomavirus JCV, which causes Progressive Multifocal
Leukoencephalopathy, is initiated by the virally encoded T-antigen (T-ag). The structure of …

Determining translocation orientations of nucleic acid helicases

HM Perera, MA Trakselis - Methods, 2022 - Elsevier
Helicase enzymes translocate along an RNA or DNA template with a defined polarity to
unwind, separate, or remodel duplex strands for a variety of genome maintenance …