Dual-specificity, tyrosine phosphorylation-regulated kinases (DYRKs) and cdc2-like kinases (CLKs) in human disease, an overview

MF Lindberg, L Meijer - International Journal of Molecular Sciences, 2021 - mdpi.com
Dual-specificity tyrosine phosphorylation-regulated kinases (DYRK1A, 1B, 2-4) and cdc2-
like kinases (CLK1-4) belong to the CMGC group of serine/threonine kinases. These protein …

Alternative splicing: the pledge, the turn, and the prestige: the key role of alternative splicing in human biological systems

LM Gallego-Paez, MC Bordone, AC Leote… - Human genetics, 2017 - Springer
Alternative pre-mRNA splicing is a tightly controlled process conducted by the spliceosome,
with the assistance of several regulators, resulting in the expression of different transcript …

Intron retention is a source of neoepitopes in cancer

AC Smart, CA Margolis, H Pimentel, MX He… - Nature …, 2018 - nature.com
We present an in silico approach to identifying neoepitopes derived from intron retention
events in tumor transcriptomes. Using mass spectrometry immunopeptidome analysis, we …

Systematic mapping of nuclear domain-associated transcripts reveals speckles and lamina as hubs of functionally distinct retained introns

AR Barutcu, M Wu, U Braunschweig, BJA Dyakov… - Molecular cell, 2022 - cell.com
The nucleus is highly compartmentalized through the formation of distinct classes of
membraneless domains. However, the composition and function of many of these structures …

Lnc RNA‐dependent nuclear stress bodies promote intron retention through SR protein phosphorylation

K Ninomiya, S Adachi, T Natsume, J Iwakiri… - The EMBO …, 2020 - embopress.org
A number of long noncoding RNA s (lnc RNA s) are induced in response to specific stresses
to construct membrane‐less nuclear bodies; however, their function remains poorly …

A conserved kinase-based body-temperature sensor globally controls alternative splicing and gene expression

T Haltenhof, A Kotte, F De Bortoli, S Schiefer, S Meinke… - Molecular Cell, 2020 - cell.com
Homeothermic organisms maintain their core body temperature in a narrow, tightly
controlled range. Whether and how subtle circadian oscillations or disease-associated …

CLK1/SRSF5 pathway induces aberrant exon skipping of METTL14 and Cyclin L2 and promotes growth and metastasis of pancreatic cancer

S Chen, C Yang, ZW Wang, JF Hu, JJ Pan… - Journal of hematology & …, 2021 - Springer
Background Both aberrant alternative splicing and m6A methylation play complicated roles
in the development of pancreatic cancer (PC), while the relationship between these two …

The ribosome-engaged landscape of alternative splicing

RJ Weatheritt, T Sterne-Weiler… - Nature structural & …, 2016 - nature.com
High-throughput RNA sequencing (RNA-seq) has revealed an enormous complexity of
alternative splicing (AS) across diverse cell and tissue types. However, it is currently …

CDK12 regulates alternative last exon mRNA splicing and promotes breast cancer cell invasion

JF Tien, A Mazloomian, SWG Cheng… - Nucleic acids …, 2017 - academic.oup.com
Abstract CDK12 (cyclin-dependent kinase 12) is a regulatory kinase with evolutionarily
conserved roles in modulating transcription elongation. Recent tumor genome studies of …

m6A modification of HSATIII lncRNAs regulates temperature‐dependent splicing

K Ninomiya, J Iwakiri, MK Aly, Y Sakaguchi… - The EMBO …, 2021 - embopress.org
Nuclear stress bodies (nSBs) are nuclear membraneless organelles formed around stress‐
inducible HSATIII architectural long noncoding RNAs (lncRNAs). nSBs repress splicing of …