CITEdb: a manually curated database of cell–cell interactions in human

N Shan, Y Lu, H Guo, D Li, J Jiang, L Yan, J Gao… - …, 2022 - academic.oup.com
Motivation The interactions among various types of cells play critical roles in cell functions
and the maintenance of the entire organism. While cell–cell interactions are traditionally …

Building a knowledge base for systems pathology

H Michael, J Hogan, A Kel… - Briefings in …, 2008 - academic.oup.com
Translating the exponentially growing amount of omics data into knowledge usable for a
personalized medicine approach poses a formidable challenge. In this article—taking …

The ontology-based answers (OBA) service: a connector for embedded usage of ontologies in applications

J Dönitz, E Wingender - Frontiers in genetics, 2012 - frontiersin.org
The semantic web depends on the use of ontologies to let electronic systems interpret
contextual information. Optimally, the handling and access of ontologies should be …

Predicting the phenotypic values of physiological traits using SNP genotype and gene expression data in mice

Y Takagi, H Matsuda, Y Taniguchi, H Iwaisaki - PLoS One, 2014 - journals.plos.org
Predicting phenotypes using genome-wide genetic variation and gene expression data is
useful in several fields, such as human biology and medicine, as well as in crop and …

[HTML][HTML] Reverse tracking from drug-induced transcriptomes through multilayer molecular networks reveals hidden drug targets

G Kim, D Lee - Computers in Biology and Medicine, 2023 - Elsevier
Identifying molecular targets of a drug is an essential process for drug discovery and
development. The recent in-silico approaches are usually based on the structure information …

EndoNet: an information resource about the intercellular signaling network

J Dönitz, E Wingender - BMC systems biology, 2014 - Springer
Background In multicellular organisms, an intercellular signaling network communicates
information from the environment or distant tissues to defined target cells. Intercellular …

geneXplain—eine integrierte Bioinformatik-Plattform

E Wingender, A Kel - BIOspektrum, 2012 - Springer
Bioinformatics tools are today an indispensable part of life-science research. There is a
huge demand of intuitively usable bioinformatics tools, which enable experimental …

Annotation extension through protein family annotation coherence metrics

HP Bastos, LA Clarke, FM Couto - Frontiers in genetics, 2013 - frontiersin.org
Protein functional annotation consists in associating proteins with textual descriptors
elucidating their biological roles. The bulk of annotation is done via automated procedures …

Molekularbiologische Datenbanken und Austauschformate

S Eckstein, S Eckstein - Informationsmanagement in der Systembiologie …, 2011 - Springer
Zusammenfassung Durch Experimente und deren Beobachtungen entstehen
experimentelle Daten. Durch Massenexperimente–wie zum Beispiel Gensequenzierungen …

[引用][C] Development and application of ontologies for biological applications

PEI im Promotionsprogramm Umweltinformatik…