Rosetta brains: a strategy for molecularly-annotated connectomics

AH Marblestone, ER Daugharthy, R Kalhor… - arXiv preprint arXiv …, 2014 - arxiv.org
We propose a neural connectomics strategy called Fluorescent In-Situ Sequencing of
Barcoded Individual Neuronal Connections (FISSEQ-BOINC), leveraging fluorescent in situ …

Conneconomics: the economics of dense, large-scale, high-resolution neural connectomics

AH Marblestone, ER Daugharthy, R Kalhor, ID Peikon… - Biorxiv, 2013 - biorxiv.org
We analyze the scaling and cost-performance characteristics of current and projected
connectomics approaches, with reference to the potential implications of recent advances in …

A review of intrinsic optical imaging serial blockface histology (ICI-SBH) for whole rodent brain imaging

J Lefebvre, P Delafontaine-Martel, F Lesage - Photonics, 2019 - mdpi.com
In recent years, multiple serial histology techniques were developed to enable whole rodent
brain imaging in 3-D. The main driving forces behind the emergence of these imaging …

Random-forest-based automated cell detection in Knife-Edge scanning Microscope rat Nissl data

SL Das, J Keyser, Y Choe - 2015 International Joint Conference …, 2015 - ieeexplore.ieee.org
Rapid advances in high-resolution, high-throughput 3D microscopy techniques in the past
decade have opened up new avenues for brain research. One such technique developed in …

Connectome, general

Y Choe - Encyclopedia of Computational Neuroscience, 2022 - Springer
Introduction Studies of categorical decision-making attempt to understand behavior by
probing how different features of complex and changing environments guide the selection of …

Automated reconstruction of neurovascular networks in knife-edge scanning microscope rat brain nissl data set

W An, Y Choe - Advances in Visual Computing: 12th International …, 2016 - Springer
Analyzing mammalian brain image can help to understand the interaction between cerebral
blood flow and its surrounding tissue. However, extracting the geometry of the vasculature …

Automated neurovascular tracing and analysis of the knife-edge scanning microscope rat nissl data set using a computing cluster

S Lim, MR Nowak, Y Choe - 2016 38th Annual International …, 2016 - ieeexplore.ieee.org
We present a novel, parallelizable algorithm capable of automatically reconstructing and
calculating anatomical statistics of cerebral vascular networks embedded in large volumes …

Scalable, incremental learning with MapReduce parallelization for cell detection in high-resolution 3d microscopy data

C Sung, J Woo, M Goodman… - The 2013 International …, 2013 - ieeexplore.ieee.org
Accurate estimation of neuronal count and distribution is central to the understanding of the
organization and layout of cortical maps in the brain, and changes in the cell population …

Automated neurovascular tracing and analysis of the knife-edge scanning microscope india ink data set

W Yang - 2014 - oaktrust.library.tamu.edu
The 3D reconstruction of neurovascular network plays an important role in understanding
the functions of the blood vessels in different brain regions. Many techniques have been …

Central and Peripheral Transcriptomic Networks Driving Cardiovascular Control

AR Moss - 2021 - search.proquest.com
Cardiovascular disease is a widespread systemic disease that contributes substantially to
morbidity and mortality rates both in the United States and across the globe, with …