Optimized implementation of the hpcg benchmark on reconfigurable hardware

A Zeni, K O'Brien, M Blott, MD Santambrogio - European Conference on …, 2021 - Springer
The HPCG benchmark represents a modern complement to the HPL benchmark in the
performance evaluation of HPC systems, as it has been recognized as a more …

TSUNAMI: A GPU implementation of the WFA algorithm

G Gerometta, A Zeni… - 2023 32nd International …, 2023 - ieeexplore.ieee.org
Pairwise sequence alignment represents a fundamental step in the genome assembly
pipeline, being the most time-consuming step and the bottleneck factor in multiple …

Surfing the wavefront of genome alignment

B Branchini, G Gerometta, L Cicolini… - … on Circuits and …, 2022 - ieeexplore.ieee.org
Pairwise sequence alignment represents a fundamental step in genome and molecular
analysis applications, accounting for most of their runtime. Given the quadratic time …

High-performance computing architecture for sample value processing in the smart grid

L Sun, L Muguira, J Jiménez, A Astarloa… - IEEE Access, 2022 - ieeexplore.ieee.org
The digitalization of the Electric Grid is a continuous process, both for operational and user
networks. For example, in the energy transport infrastructures, the Ethernet broadcasting of …

Fast genome analysis leveraging exact string matching

B Branchini, S Breschi, A Zeni… - 2022 IEEE …, 2022 - ieeexplore.ieee.org
Genome assembly is one of the most challenging tasks in bioinformatics, as it is the key to
many applications. One of the fundamental tasks in genome assembly is exact sequence …

Analysis and deployment of applications acceleration environment for Xilinx hardware-accelerated platforms

A Santiago, L Muguira, J Jiménez… - … 37th Conference on …, 2022 - ieeexplore.ieee.org
High Performance Computing is a practice that consists of adding computing power above
what any typical computer or workstation can provide. Greater performance is achieved by …

Salsa: A domain specific architecture for sequence alignment

L Di Tucci, R Baghdadi, S Amarasinghe… - 2020 IEEE …, 2020 - ieeexplore.ieee.org
The explosion of genomic data is fostering research in fields such as personalized medicine
and agritech, raising the necessity of providing more performant, power-efficient and easy-to …

Graph-based techniques and strategies for diagnosis and characterization of neurodegenerative diseases

L Hernández Lorenzo - 2024 - docta.ucm.es
Creo que no hay sección que se me haya atascado más de escribir que ésta. El temor de
enfrentarme a una hoja en blanco y ser incapaz de plasmar correctamente lo que siento. La …

MapReduce Model Using FPGA Acceleration for Chromosome Y Sequence Mapping

AG Seliem, HFA Hamed, W Abouelwafa - IEEE Access, 2021 - ieeexplore.ieee.org
Genome assemblies sequenced by a Whole Genome Shotgun (WGS) project predict an
organism's function and history. Sequence alignment is the foundation of bioinformatics by a …

[PDF][PDF] FACULTAD DE INFORMÁTICA

LH Lorenzo - 2024 - docta.ucm.es
Creo que no hay sección que se me haya atascado más de escribir que ésta. El temor de
enfrentarme a una hoja en blanco y ser incapaz de plasmar correctamente lo que siento. La …