Deep learning in clinical natural language processing: a methodical review

S Wu, K Roberts, S Datta, J Du, Z Ji, Y Si… - Journal of the …, 2020 - academic.oup.com
Objective This article methodically reviews the literature on deep learning (DL) for natural
language processing (NLP) in the clinical domain, providing quantitative analysis to answer …

Use of natural language processing to extract clinical cancer phenotypes from electronic medical records

GK Savova, I Danciu, F Alamudun, T Miller, C Lin… - Cancer research, 2019 - AACR
Current models for correlating electronic medical records with-omics data largely ignore
clinical text, which is an important source of phenotype information for patients with cancer …

A survey on deep learning event extraction: Approaches and applications

Q Li, J Li, J Sheng, S Cui, J Wu, Y Hei… - … on Neural Networks …, 2022 - ieeexplore.ieee.org
Event extraction (EE) is a crucial research task for promptly apprehending event information
from massive textual data. With the rapid development of deep learning, EE based on deep …

Joint event and temporal relation extraction with shared representations and structured prediction

R Han, Q Ning, N Peng - arXiv preprint arXiv:1909.05360, 2019 - arxiv.org
We propose a joint event and temporal relation extraction model with shared representation
learning and structured prediction. The proposed method has two advantages over existing …

Selecting optimal context sentences for event-event relation extraction

H Man, NT Ngo, LN Van, TH Nguyen - Proceedings of the AAAI …, 2022 - ojs.aaai.org
Understanding events entails recognizing the structural and temporal orders between event
mentions to build event structures/graphs for input documents. To achieve this goal, our …

What is event knowledge graph: A survey

S Guan, X Cheng, L Bai, F Zhang, Z Li… - … on Knowledge and …, 2022 - ieeexplore.ieee.org
Besides entity-centric knowledge, usually organized as Knowledge Graph (KG), events are
also an essential kind of knowledge in the world, which trigger the spring up of event-centric …

TORQUE: A reading comprehension dataset of temporal ordering questions

Q Ning, H Wu, R Han, N Peng, M Gardner… - arXiv preprint arXiv …, 2020 - arxiv.org
A critical part of reading is being able to understand the temporal relationships between
events described in a passage of text, even when those relationships are not explicitly …

[HTML][HTML] HKGB: an inclusive, extensible, intelligent, semi-auto-constructed knowledge graph framework for healthcare with clinicians' expertise incorporated

Y Zhang, M Sheng, R Zhou, Y Wang, G Han… - Information Processing …, 2020 - Elsevier
Health knowledge graph provides an ideal technical means to integrate heterogeneous data
resources and enhance knowledge-based services. There are many challenges for the …

A BERT-based universal model for both within-and cross-sentence clinical temporal relation extraction

C Lin, T Miller, D Dligach, S Bethard… - Proceedings of the 2nd …, 2019 - aclanthology.org
Classic methods for clinical temporal relation extraction focus on relational candidates within
a sentence. On the other hand, break-through Bidirectional Encoder Representations from …

[HTML][HTML] Modern clinical text mining: a guide and review

B Percha - Annual review of biomedical data science, 2021 - annualreviews.org
Electronic health records (EHRs) are becoming a vital source of data for healthcare quality
improvement, research, and operations. However, much of the most valuable information …