The how and why of lncRNA function: an innate immune perspective

EK Robinson, S Covarrubias, S Carpenter - Biochimica et Biophysica Acta …, 2020 - Elsevier
Next-generation sequencing has provided a more complete picture of the composition of the
human transcriptome indicating that much of the “blueprint” is a vastness of poorly …

Technological developments in lncRNA biology

S Jathar, V Kumar, J Srivastava, V Tripathi - Long Non Coding RNA …, 2017 - Springer
It is estimated that more than 90% of the mammalian genome is transcribed as non-coding
RNAs. Recent evidences have established that these non-coding transcripts are not junk or …

Small RNAs are modified with N-glycans and displayed on the surface of living cells

RA Flynn, K Pedram, SA Malaker, PJ Batista… - Cell, 2021 - cell.com
Glycans modify lipids and proteins to mediate inter-and intramolecular interactions across all
domains of life. RNA is not thought to be a major target of glycosylation. Here, we challenge …

Atlas of subcellular RNA localization revealed by APEX-Seq

FM Fazal, S Han, KR Parker, P Kaewsapsak, J Xu… - Cell, 2019 - cell.com
We introduce APEX-seq, a method for RNA sequencing based on direct proximity labeling of
RNA using the peroxidase enzyme APEX2. APEX-seq in nine distinct subcellular locales …

Dynamic characterization and interpretation for protein-RNA interactions across diverse cellular conditions using HDRNet

H Zhu, Y Yang, Y Wang, F Wang, Y Huang… - Nature …, 2023 - nature.com
RNA-binding proteins play crucial roles in the regulation of gene expression, and
understanding the interactions between RNAs and RBPs in distinct cellular conditions forms …

Long non-coding RNA structure and function: is there a link?

A Zampetaki, A Albrecht, K Steinhofel - Frontiers in physiology, 2018 - frontiersin.org
RNA has emerged as the prime target for diagnostics, therapeutics and the development of
personalized medicine. In particular, the non-coding RNAs (ncRNAs) that do not encode …

RNA structure maps across mammalian cellular compartments

L Sun, FM Fazal, P Li, JP Broughton, B Lee… - Nature structural & …, 2019 - nature.com
RNA structure is intimately connected to each step of gene expression. Recent advances
have enabled transcriptome-wide maps of RNA secondary structure, called 'RNA …

Platforms for investigating LncRNA functions

JL Charles Richard… - … : Translating Life Sciences …, 2018 - journals.sagepub.com
Prior to the sequencing of the human genome, it was presumed that most of the DNA coded
for proteins. However, with the advent of next-generation sequencing, it has now been …

Predicting dynamic cellular protein–RNA interactions by deep learning using in vivo RNA structures

L Sun, K Xu, W Huang, YT Yang, P Li, L Tang, T Xiong… - Cell research, 2021 - nature.com
Interactions with RNA-binding proteins (RBPs) are integral to RNA function and cellular
regulation, and dynamically reflect specific cellular conditions. However, presently available …

ALKBH7-mediated demethylation regulates mitochondrial polycistronic RNA processing

LS Zhang, QP Xiong, S Peña Perez, C Liu, J Wei… - Nature cell …, 2021 - nature.com
Members of the mammalian AlkB family are known to mediate nucleic acid demethylation,.
ALKBH7, a mammalian AlkB homologue, localizes in mitochondria and affects metabolism …