New approaches for metagenome assembly with short reads
M Ayling, MD Clark, RM Leggett - Briefings in bioinformatics, 2020 - academic.oup.com
In recent years, the use of longer range read data combined with advances in assembly
algorithms has stimulated big improvements in the contiguity and quality of genome …
algorithms has stimulated big improvements in the contiguity and quality of genome …
Bats as viral reservoirs
DTS Hayman - Annual review of virology, 2016 - annualreviews.org
Bats are hosts of a range of viruses, including ebolaviruses, and many important human viral
infections, such as measles and mumps, may have their ancestry traced back to bats. Here, I …
infections, such as measles and mumps, may have their ancestry traced back to bats. Here, I …
A novel porcine circovirus distantly related to known circoviruses is associated with porcine dermatitis and nephropathy syndrome and reproductive failure
Porcine circovirus-associated disease (PCVAD) is clinically manifested by postweaning
multisystemic wasting syndrome (PMWS), respiratory and enteric disease, reproductive …
multisystemic wasting syndrome (PMWS), respiratory and enteric disease, reproductive …
DBatVir: the database of bat-associated viruses
L Chen, B Liu, J Yang, Q Jin - Database, 2014 - academic.oup.com
Emerging infectious diseases remain a significant threat to public health. Most emerging
infectious disease agents in humans are of zoonotic origin. Bats are important reservoir …
infectious disease agents in humans are of zoonotic origin. Bats are important reservoir …
Poxvirus host range genes and virus–host spectrum: a critical review
The Poxviridae family is comprised of double-stranded DNA viruses belonging to
nucleocytoplasmic large DNA viruses (NCLDV). Among the NCLDV, poxviruses exhibit the …
nucleocytoplasmic large DNA viruses (NCLDV). Among the NCLDV, poxviruses exhibit the …
Discovery of a novel Parvovirinae virus, porcine parvovirus 7, by metagenomic sequencing of porcine rectal swabs
Parvoviruses are a diverse group of viruses containing some of the smallest known species
that are capable of infecting a wide range of animals. Metagenomic sequencing of pooled …
that are capable of infecting a wide range of animals. Metagenomic sequencing of pooled …
Exploring the rice dispensable genome using a metagenome-like assembly strategy
Background The dispensable genome of a species, consisting of the dispensable
sequences present only in a subset of individuals, is believed to play important roles in …
sequences present only in a subset of individuals, is believed to play important roles in …
[HTML][HTML] The use of next generation sequencing in the diagnosis and typing of respiratory infections
F Thorburn, S Bennett, S Modha, D Murdoch… - Journal of Clinical …, 2015 - Elsevier
Background Molecular assays are the gold standard methods used to diagnose viral
respiratory pathogens. Pitfalls associated with this technique include limits to the number of …
respiratory pathogens. Pitfalls associated with this technique include limits to the number of …
Adaptive duplication and genetic diversification of protein kinase R contribute to the specificity of bat-virus interactions
S Jacquet, M Culbertson, C Zhang, A El Filali… - Science …, 2022 - science.org
Several bat species act as asymptomatic reservoirs for many viruses that are highly
pathogenic in other mammals. Here, we have characterized the functional diversification of …
pathogenic in other mammals. Here, we have characterized the functional diversification of …
A preliminary study of viral metagenomics of French bat species in contact with humans: identification of new mammalian viruses
L Dacheux, M Cervantes-Gonzalez, G Guigon… - PloS one, 2014 - journals.plos.org
The prediction of viral zoonosis epidemics has become a major public health issue. A
profound understanding of the viral population in key animal species acting as reservoirs …
profound understanding of the viral population in key animal species acting as reservoirs …