Pangenomics reveals alternative environmental lifestyles among chlamydiae

S Köstlbacher, A Collingro, T Halter, F Schulz… - Nature …, 2021 - nature.com
Chlamydiae are highly successful strictly intracellular bacteria associated with diverse
eukaryotic hosts. Here we analyzed metagenome-assembled genomes of the “Genomes …

Persistent memory as an effective alternative to random access memory in metagenome assembly

J Sun, Z Qiu, R Egan, H Ho, Y Li, Z Wang - BMC bioinformatics, 2022 - Springer
Background The assembly of metagenomes decomposes members of complex microbe
communities and allows the characterization of these genomes without laborious cultivation …

Approximate hashing for bioinformatics

G Arbitman, ST Klein, P Peterlongo… - … on Implementation and …, 2021 - Springer
The paper extends ideas from data compression by deduplication to the Bioinformatic field.
The specific problems on which we show our approach to be useful are the clustering of a …

[图书][B] Introduction to Computational Metagenomics

Z Wang - 2022 - World Scientific
Most of microorganisms are small, invisible to human eyes, and some even invisible to
optical microscopes. Yet microbes are everywhere: they present in the air we breathe in, in …

Automatically Selecting Parameters for Graph-Based Clustering

R Callister - 2020 - espace.curtin.edu.au
Data streams present a number of challenges, caused by change in stream concepts over
time. In this thesis we present a novel method for detection of concept drift within data …