Protein analysis by shotgun/bottom-up proteomics

Y Zhang, BR Fonslow, B Shan, MC Baek… - Chemical …, 2013 - ACS Publications
According to Genome Sequencing Project statistics (http://www. ncbi. nlm. nih.
gov/genomes/static/gpstat. html), as of February 16, 2012, complete gene sequences have …

The economy of brain network organization

E Bullmore, O Sporns - Nature reviews neuroscience, 2012 - nature.com
The brain is expensive, incurring high material and metabolic costs for its size—relative to
the size of the body—and many aspects of brain network organization can be mostly …

Human symptoms–disease network

XZ Zhou, J Menche, AL Barabási, A Sharma - Nature communications, 2014 - nature.com
In the post-genomic era, the elucidation of the relationship between the molecular origins of
diseases and their resulting phenotypes is a crucial task for medical research. Here, we use …

Structural biology and evolution of the TGF-β family

AP Hinck, TD Mueller… - Cold Spring Harbor …, 2016 - cshperspectives.cshlp.org
We review the evolution and structure of members of the transforming growth factor β (TGF-
β) family, antagonistic or agonistic modulators, and receptors that regulate TGF-β signaling …

[HTML][HTML] Interactome networks and human disease

M Vidal, ME Cusick, AL Barabási - Cell, 2011 - cell.com
Complex biological systems and cellular networks may underlie most genotype to
phenotype relationships. Here, we review basic concepts in network biology, discussing …

The Notch signalling system: recent insights into the complexity of a conserved pathway

KG Guruharsha, MW Kankel… - Nature Reviews …, 2012 - nature.com
Notch signalling links the fate of one cell to that of an immediate neighbour and
consequently controls differentiation, proliferation and apoptotic events in multiple metazoan …

Panorama of ancient metazoan macromolecular complexes

C Wan, B Borgeson, S Phanse, F Tu, K Drew, G Clark… - Nature, 2015 - nature.com
Macromolecular complexes are essential to conserved biological processes, but their
prevalence across animals is unclear. By combining extensive biochemical fractionation …

Network biology: understanding the cell's functional organization

AL Barabasi, ZN Oltvai - Nature reviews genetics, 2004 - nature.com
A key aim of postgenomic biomedical research is to systematically catalogue all molecules
and their interactions within a living cell. There is a clear need to understand how these …

Methods for biological data integration: perspectives and challenges

V Gligorijević, N Pržulj - Journal of the Royal Society …, 2015 - royalsocietypublishing.org
Rapid technological advances have led to the production of different types of biological data
and enabled construction of complex networks with various types of interactions between …

BioGRID: a general repository for interaction datasets

C Stark, BJ Breitkreutz, T Reguly, L Boucher… - Nucleic acids …, 2006 - academic.oup.com
Access to unified datasets of protein and genetic interactions is critical for interrogation of
gene/protein function and analysis of global network properties. BioGRID is a freely …