[HTML][HTML] The evolution of seasonal influenza viruses

VN Petrova, CA Russell - Nature Reviews Microbiology, 2018 - nature.com
Despite decades of surveillance and pharmaceutical and non-pharmaceutical interventions,
seasonal influenza viruses continue to cause epidemics around the world each year. The …

Co-evolution of immunity and seasonal influenza viruses

AX Han, SPJ de Jong, CA Russell - Nature Reviews Microbiology, 2023 - nature.com
Seasonal influenza viruses cause recurring global epidemics by continually evolving to
escape host immunity. The viral constraints and host immune responses that limit and drive …

Reassortment in segmented RNA viruses: mechanisms and outcomes

SM McDonald, MI Nelson, PE Turner… - Nature Reviews …, 2016 - nature.com
Segmented RNA viruses are widespread in nature and include important human, animal
and plant pathogens, such as influenza viruses and rotaviruses. Although the origin of RNA …

The ecology and evolution of influenza viruses

M Wille, EC Holmes - Cold Spring …, 2020 - perspectivesinmedicine.cshlp.org
The patterns and processes of influenza virus evolution are of fundamental importance,
underpinning such traits as the propensity to emerge in new host species and the ability to …

H3N2 influenza viruses in humans: Viral mechanisms, evolution, and evaluation

JD Allen, TM Ross - Human vaccines & immunotherapeutics, 2018 - Taylor & Francis
Annual seasonal influenza vaccines are composed of two influenza A strains representing
the H1N1 and H3N2 subtypes, and two influenza B strains representing the Victoria and …

Quantifying influenza virus diversity and transmission in humans

LLM Poon, T Song, R Rosenfeld, X Lin, MB Rogers… - Nature …, 2016 - nature.com
Influenza A virus is characterized by high genetic diversity,,. However, most of what is known
about influenza evolution has come from consensus sequences sampled at the …

[HTML][HTML] Viral deep sequencing needs an adaptive approach: IRMA, the iterative refinement meta-assembler

SS Shepard, S Meno, J Bahl, MM Wilson, J Barnes… - BMC genomics, 2016 - Springer
Background Deep sequencing makes it possible to observe low-frequency viral variants and
sub-populations with greater accuracy and sensitivity than ever before. Existing platforms …

Mechanisms and concepts in RNA virus population dynamics and evolution

PT Dolan, ZJ Whitfield, R Andino - Annual Review of Virology, 2018 - annualreviews.org
RNA viruses are unique in their evolutionary capacity, exhibiting high mutation rates and
frequent recombination. They rapidly adapt to environmental changes, such as shifts in …

Influenza A virus reassortment

J Steel, AC Lowen - Influenza Pathogenesis and Control-Volume I, 2014 - Springer
Reassortment is the process by which influenza viruses swap gene segments. This genetic
exchange is possible due to the segmented nature of the viral genome and occurs when two …

Constraints, drivers, and implications of influenza A virus reassortment

AC Lowen - Annual review of virology, 2017 - annualreviews.org
Influenza A viruses are constantly changing. This change accounts for seasonal epidemics,
infrequent pandemics, and zoonotic outbreaks. A major mechanism underlying the genetic …