[HTML][HTML] Computerized cell tracking: Current methods, tools and challenges

N Emami, Z Sedaei, R Ferdousi - Visual Informatics, 2021 - Elsevier
In developmental biology, knowledge of cell structure and their (morpho) dynamic behavior,
leads to a comprehensive understanding of their conducts and the mechanisms in which …

[HTML][HTML] Characterising live cell behaviour: Traditional label-free and quantitative phase imaging approaches

R Kasprowicz, R Suman, P O'Toole - … journal of biochemistry & cell biology, 2017 - Elsevier
Label-free imaging uses inherent contrast mechanisms within cells to create image contrast
without introducing dyes/labels, which may confound results. Quantitative phase imaging is …

TrackMate: An open and extensible platform for single-particle tracking

JY Tinevez, N Perry, J Schindelin, GM Hoopes… - Methods, 2017 - Elsevier
We present TrackMate, an open source Fiji plugin for the automated, semi-automated, and
manual tracking of single-particles. It offers a versatile and modular solution that works out of …

Exercise rejuvenates quiescent skeletal muscle stem cells in old mice through restoration of Cyclin D1

JO Brett, M Arjona, M Ikeda, M Quarta, A de Morrée… - Nature …, 2020 - nature.com
Ageing impairs tissue repair. This defect is pronounced in skeletal muscle, whose
regeneration by muscle stem cells (MuSCs) is robust in young-adult animals, but inefficient …

[HTML][HTML] Usiigaci: Instance-aware cell tracking in stain-free phase contrast microscopy enabled by machine learning

HF Tsai, J Gajda, TFW Sloan, A Rares, AQ Shen - SoftwareX, 2019 - Elsevier
Stain-free, single-cell segmentation and tracking is tantamount to the holy grail of
microscopic cell migration analysis. Phase contrast microscopy (PCM) images with cells at …

[HTML][HTML] Automated cell tracking using StarDist and TrackMate

E Fazeli, NH Roy, G Follain, RF Laine… - …, 2020 - ncbi.nlm.nih.gov
The ability of cells to migrate is a fundamental physiological process involved in embryonic
development, tissue homeostasis, immune surveillance, and wound healing. Therefore, the …

Behaviors of Glioblastoma Cells in in Vitro Microenvironments

W Diao, X Tong, C Yang, F Zhang, C Bao, H Chen… - Scientific reports, 2019 - nature.com
Glioblastoma (GBM) is the most malignant and highly aggressive brain tumor. In this study,
four types of typical GBM cell lines (LN229, SNB19, U87, U251) were cultured in a …

CellTracker (not only) for dummies

F Piccinini, A Kiss, P Horvath - Bioinformatics, 2016 - academic.oup.com
Motivation: Time-lapse experiments play a key role in studying the dynamic behavior of
cells. Single-cell tracking is one of the fundamental tools for such analyses. The vast majority …

Taking aim at moving targets in computational cell migration

P Masuzzo, M Van Troys, C Ampe, L Martens - Trends in cell biology, 2016 - cell.com
Cell migration is central to the development and maintenance of multicellular organisms.
Fundamental understanding of cell migration can, for example, direct novel therapeutic …

SEMA7a primes integrin α5β1 engagement instructing fibroblast mechanotransduction, phenotype and transcriptional programming

P Hu, AE Miller, CR Yeh, GC Bingham, M Civelek… - Matrix Biology, 2023 - Elsevier
Integrins are cellular receptors that bind the extracellular matrix (ECM) and facilitate the
transduction of biochemical and biophysical microenvironment cues into cellular responses …