Coupled transcription-translation in prokaryotes: an old couple with new surprises
M Irastortza-Olaziregi, O Amster-Choder - Frontiers in Microbiology, 2021 - frontiersin.org
Coupled transcription-translation (CTT) is a hallmark of prokaryotic gene expression. CTT
occurs when ribosomes associate with and initiate translation of mRNAs whose transcription …
occurs when ribosomes associate with and initiate translation of mRNAs whose transcription …
When push comes to shove-RNA polymerase and DNA-bound protein roadblocks
N Hao, AJ Donnelly, IB Dodd, KE Shearwin - Biophysical Reviews, 2023 - Springer
In recent years, transcriptional roadblocking has emerged as a crucial regulatory
mechanism in gene expression, whereby other DNA-bound obstacles can block the …
mechanism in gene expression, whereby other DNA-bound obstacles can block the …
Improved RNA stability estimation indicates that transcriptional interference is frequent in diverse bacteria
We used stochastic simulations and experimental data from E. coli, K. aerogenes,
Synechococcus PCC 7002 and Synechocystis PCC 6803 to provide evidence that …
Synechococcus PCC 7002 and Synechocystis PCC 6803 to provide evidence that …
RoboMoClo: a robotics-assisted modular cloning framework for multiple gene assembly in biofoundry
DH Kang, SC Ko, YB Heo, HJ Lee… - ACS Synthetic …, 2022 - ACS Publications
Efficient and versatile DNA assembly frameworks have had an impact on promoting
synthetic biology to build complex biological systems. To accelerate system development …
synthetic biology to build complex biological systems. To accelerate system development …
Are antisense proteins in prokaryotes functional?
Many prokaryotic RNAs are transcribed from loci outside of annotated protein coding genes.
Across bacterial species hundreds of short open reading frames antisense to annotated …
Across bacterial species hundreds of short open reading frames antisense to annotated …
Analytical kinetic model of native tandem promoters in E. coli
Closely spaced promoters in tandem formation are abundant in bacteria. We investigated
the evolutionary conservation, biological functions, and the RNA and single-cell protein …
the evolutionary conservation, biological functions, and the RNA and single-cell protein …
Construction of two-input logic gates using transcriptional interference
Transcriptional interference (TI) has been shown to regulate gene expression at the DNA
level via different molecular mechanisms. The obstacles present on the DNA that a …
level via different molecular mechanisms. The obstacles present on the DNA that a …
Engineering transcriptional interference through RNA polymerase processivity control
Antisense transcription is widespread in all kingdoms of life and has been shown to
influence gene expression through transcriptional interference (TI), a phenomenon in which …
influence gene expression through transcriptional interference (TI), a phenomenon in which …
RNA polymerase pausing at a protein roadblock can enhance transcriptional interference by promoter occlusion
Convergent promoters exert transcriptional interference (TI) by several mechanisms
including promoter occlusion, where elongating RNA polymerases (RNAP s) block access to …
including promoter occlusion, where elongating RNA polymerases (RNAP s) block access to …
Universal Actuator for Efficient Silencing of Escherichia coli Genes Based on Convergent Transcription Resistant to Rho-Dependent Termination
AA Krylov, VV Shapovalova, EA Miticheva… - ACS Synthetic …, 2020 - ACS Publications
Dynamic control is a distinguished strategy in modern metabolic engineering, in which
inducible convergent transcription is an attractive approach for conditional gene silencing …
inducible convergent transcription is an attractive approach for conditional gene silencing …