Performance and application of 16S rRNA gene cycle sequencing for routine identification of bacteria in the clinical microbiology laboratory

DL Church, L Cerutti, A Gürtler, T Griener… - Clinical microbiology …, 2020 - Am Soc Microbiol
This review provides a state-of-the-art description of the performance of Sanger cycle
sequencing of the 16S rRNA gene for routine identification of bacteria in the clinical …

Taxonomy and Phylogenetic Research on Ralstonia solanacearum Species Complex: A Complex Pathogen with Extraordinary Economic Consequences

S Paudel, S Dobhal, AM Alvarez, M Arif - Pathogens, 2020 - mdpi.com
The bacterial wilt pathogen, first known as Bacillus solanacearum, has undergone
numerous taxonomic changes since its first description in 1896. The history and significance …

Age-based dynamic changes of phylogenetic composition and interaction networks of health pig gut microbiome feeding in a uniformed condition

S Ke, S Fang, M He, X Huang, H Yang, B Yang… - BMC veterinary …, 2019 - Springer
Background The gut microbiota impacts on a range of host biological processes, and the
imbalances in its composition are associated with pathology. Though the understanding of …

Pseudomonas rhizophila S211, a New Plant Growth-Promoting Rhizobacterium with Potential in Pesticide-Bioremediation

W Hassen, M Neifar, H Cherif, A Najjari… - Frontiers in …, 2018 - frontiersin.org
A number of Pseudomonas strains function as inoculants for biocontrol, biofertilization, and
phytostimulation, avoiding the use of pesticides and chemical fertilizers. Here, we present a …

Minimal standards for describing new species belonging to the families Campylobacteraceae and Helicobacteraceae: Campylobacter, Arcobacter, Helicobacter and …

SLW On, WG Miller, K Houf, JG Fox… - … of systematic and …, 2017 - microbiologyresearch.org
Ongoing changes in taxonomic methods, and in the rapid development of the taxonomic
structure of species assigned to the Epsilonproteobacteria have lead the International …

A re-evaluation of the taxonomy of phytopathogenic genera Dickeya and Pectobacterium using whole-genome sequencing data

Y Zhang, Q Fan, R Loria - Systematic and Applied Microbiology, 2016 - Elsevier
Abstract The genera Dickeya and Pectobacterium contain important plant pathogens.
However, species from these genera are often poorly defined and some new isolates could …

[PDF][PDF] A fast alignment-free bioinformatics procedure to infer accurate distance-based phylogenetic trees from genome assemblies

A Criscuolo - Research Ideas and Outcomes, 2019 - riojournal.com
This paper describes a novel alignment-free distance-based procedure for inferring
phylogenetic trees from genome contig sequences using publicly available bioinformatics …

Effect of bacterial cell addition on Fe (III) reduction and soil organic matter transformation in a farmland soil

J Hu, Q Zeng, H Chen, H Dong - Geochimica et Cosmochimica Acta, 2022 - Elsevier
The coupled biogeochemical processes of Fe (III) reduction and organic matter
transformation profoundly impact terrestrial carbon cycling. However, little is known about …

Degradation of antibiotics and antibiotic resistance genes in erythromycin fermentation residues using radiation coupled with peroxymonosulfate oxidation

L Chu, D Chen, J Wang, Z Yang, Y Shen - Waste Management, 2019 - Elsevier
Ionizing radiation coupled with peroxymonosulfate (PMS) oxidation was developed to
degrade antibiotics and antibiotic resistance genes (ARGs) from the erythromycin …

Enhanced production of secondary biogenic coalbed natural gas from a subbituminous coal treated by hydrogen peroxide and its geochemical and microbiological …

Q Wang, H Guo, H Wang, MA Urynowicz, A Hu, CP Yu… - Fuel, 2019 - Elsevier
Unmineable coal accounts for over 90% of the world's fossil fuel resources. Fortunately,
many coal seams contain indigenous microorganisms capable of utilizing the coal as a …