Analysis of microbial compositions: a review of normalization and differential abundance analysis
H Lin, SD Peddada - NPJ biofilms and microbiomes, 2020 - nature.com
Increasingly, researchers are discovering associations between microbiome and a wide
range of human diseases such as obesity, inflammatory bowel diseases, HIV, and so on …
range of human diseases such as obesity, inflammatory bowel diseases, HIV, and so on …
Environmental DNA metabarcoding: Transforming how we survey animal and plant communities
The genomic revolution has fundamentally changed how we survey biodiversity on earth.
High‐throughput sequencing (“HTS”) platforms now enable the rapid sequencing of DNA …
High‐throughput sequencing (“HTS”) platforms now enable the rapid sequencing of DNA …
[HTML][HTML] A conceptual guide to measuring species diversity
Three metrics of species diversity–species richness, the Shannon index and the Simpson
index–are still widely used in ecology, despite decades of valid critiques leveled against …
index–are still widely used in ecology, despite decades of valid critiques leveled against …
Multiple elements of soil biodiversity drive ecosystem functions across biomes
The role of soil biodiversity in regulating multiple ecosystem functions is poorly understood,
limiting our ability to predict how soil biodiversity loss might affect human wellbeing and …
limiting our ability to predict how soil biodiversity loss might affect human wellbeing and …
The geography of biodiversity change in marine and terrestrial assemblages
Human activities are fundamentally altering biodiversity. Projections of declines at the global
scale are contrasted by highly variable trends at local scales, suggesting that biodiversity …
scale are contrasted by highly variable trends at local scales, suggesting that biodiversity …
The number of tree species on Earth
R Cazzolla Gatti, PB Reich… - Proceedings of the …, 2022 - National Acad Sciences
One of the most fundamental questions in ecology is how many species inhabit the Earth.
However, due to massive logistical and financial challenges and taxonomic difficulties …
However, due to massive logistical and financial challenges and taxonomic difficulties …
Climate change contributes to widespread declines among bumble bees across continents
Climate change could increase species' extinction risk as temperatures and precipitation
begin to exceed species' historically observed tolerances. Using long-term data for 66 …
begin to exceed species' historically observed tolerances. Using long-term data for 66 …
[图书][B] Environmental DNA: For biodiversity research and monitoring
Environmental DNA (eDNA) refers to DNA that can be extracted from environmental
samples (such as soil, water, feces, or air) without the prior isolation of any target organism …
samples (such as soil, water, feces, or air) without the prior isolation of any target organism …
[图书][B] Metacommunity ecology, volume 59
MA Leibold, JM Chase - 2018 - degruyter.com
Metacommunity ecology links smaller-scale processes that have been the provenance of
population and community ecology—such as birth-death processes, species interactions …
population and community ecology—such as birth-death processes, species interactions …
Modeling the ecology and evolution of biodiversity: Biogeographical cradles, museums, and graves
INTRODUCTION Individual processes that shape geographical patterns of biodiversity are
increasingly understood, but their complex interactions on broad spatial and temporal scales …
increasingly understood, but their complex interactions on broad spatial and temporal scales …