US FDA approved drugs from 2015–June 2020: a perspective

P Bhutani, G Joshi, N Raja, N Bachhav… - Journal of Medicinal …, 2021 - ACS Publications
In the present work, we report compilation and analysis of 245 drugs, including small and
macromolecules approved by the US FDA from 2015 until June 2020. Nearly 29% of the …

Practical aspects of free-energy calculations: a review

N Hansen, WF Van Gunsteren - Journal of chemical theory and …, 2014 - ACS Publications
Free-energy calculations in the framework of classical molecular dynamics simulations are
nowadays used in a wide range of research areas including solvation thermodynamics …

[HTML][HTML] Best practices for alchemical free energy calculations [article v1. 0]

ASJS Mey, BK Allen, HEB Macdonald… - Living journal of …, 2020 - ncbi.nlm.nih.gov
Alchemical free energy calculations are a useful tool for predicting free energy differences
associated with the transfer of molecules from one environment to another. The hallmark of …

Using AMBER18 for relative free energy calculations

LF Song, TS Lee, C Zhu, DM York… - Journal of chemical …, 2019 - ACS Publications
With renewed interest in free energy methods in contemporary structure-based drug design,
there is a pressing need to validate against multiple targets and force fields to assess the …

Opicapone as an adjunct to levodopa in patients with Parkinson's disease and end-of-dose motor fluctuations: a randomised, double-blind, controlled trial

JJ Ferreira, A Lees, JF Rocha, W Poewe… - The Lancet …, 2016 - thelancet.com
Background Opicapone is a novel, once-daily, potent third-generation catechol-O-
methyltransferase inhibitor. We aimed to assess the safety and efficacy of opicapone as an …

Ligand binding free energy and kinetics calculation in 2020

V Limongelli - Wiley Interdisciplinary Reviews: Computational …, 2020 - Wiley Online Library
Ligand/protein binding (LPB) is a major topic in medicine, chemistry and biology. Since the
advent of computers, many scientists have put efforts in developing theoretical models that …

Free energy methods in drug design: prospects of “alchemical perturbation” in medicinal chemistry: miniperspective

BJ Williams-Noonan, E Yuriev… - Journal of medicinal …, 2018 - ACS Publications
Underpinning all drug discovery projects is the interaction between a drug and its target,
usually a protein. Thus, improved methods for predicting the magnitude of protein–ligand …

Catechol-O-Methyltransferase Inhibitors in Parkinson's Disease

T Müller - Drugs, 2015 - Springer
Inhibitors of catechol-O-methyltransferase (COMT) are commonly used as an adjunct to
levodopa in patients with Parkinson's disease (PD) for the amelioration of wearing-off …

Perspective: Alchemical free energy calculations for drug discovery

DL Mobley, PV Klimovich - The Journal of chemical physics, 2012 - pubs.aip.org
Computational techniques see widespread use in pharmaceutical drug discovery, but
typically prove unreliable in predicting trends in protein-ligand binding. Alchemical free …

Lead optimization mapper: automating free energy calculations for lead optimization

S Liu, Y Wu, T Lin, R Abel, JP Redmann… - Journal of computer …, 2013 - Springer
Alchemical free energy calculations hold increasing promise as an aid to drug discovery
efforts. However, applications of these techniques in discovery projects have been relatively …