Challenges in antibody structure prediction
Advances in structural biology and the exponential increase in the amount of high-quality
experimental structural data available in the Protein Data Bank has motivated numerous …
experimental structural data available in the Protein Data Bank has motivated numerous …
iCn3D: from web-based 3D viewer to structural analysis tool in batch mode
J Wang, P Youkharibache, A Marchler-Bauer… - Frontiers in molecular …, 2022 - frontiersin.org
iCn3D was initially developed as a web-based 3D molecular viewer. It then evolved from
visualization into a full-featured interactive structural analysis software. It became a …
visualization into a full-featured interactive structural analysis software. It became a …
Structure and Dynamics Guiding Design of Antibody Therapeutics and Vaccines
Antibodies and other new antibody-like formats have emerged as one of the most rapidly
growing classes of biotherapeutic proteins. Understanding the structural features that drive …
growing classes of biotherapeutic proteins. Understanding the structural features that drive …
Crystal Structure of a Chimeric Antigen Receptor (CAR) scFv Domain Rearrangement Forming a VL-VL Dimer
J Cheung, S Wazir, DR Bell, JN Kochenderfer… - Crystals, 2023 - mdpi.com
Chimeric Antigen Receptor T-cell (CAR-T) immunotherapies are dependent upon designed
transmembrane proteins to bind target antigens and stimulate an immune response. The …
transmembrane proteins to bind target antigens and stimulate an immune response. The …
A universal residue numbering scheme for the Immunoglobulin-fold (Ig-fold) to study Ig-Proteomes and Ig-Interactomes
C Tawfeeq, J Wang, U Khaniya, T Madej, J Song… - bioRxiv, 2024 - biorxiv.org
ABSTRACT The Immunoglobulin fold (Ig-fold) is found in proteins from all domains of life
and represents the most populous fold in the human genome, with current estimates ranging …
and represents the most populous fold in the human genome, with current estimates ranging …
Unusual traits shape the architecture of the Ig ancestor molecule
A Urdiciain, T Madej, J Wang, J Song, E Erausquin… - bioRxiv, 2024 - biorxiv.org
Understanding the ancestral Ig domain's molecular structure and tracing the evolution of Ig-
like proteins are fundamental components missing from our comprehension of their …
like proteins are fundamental components missing from our comprehension of their …
Towards a structural and functional analysis of the immunoglobulin-fold proteome.
C Tawfeeq, J Song, U Khaniya, T Madej… - Advances in Protein …, 2024 - europepmc.org
The immunoglobulin fold (Ig fold) domain is a super-secondary structural motif consisting of
a sandwich with two layers of β-sheets that is present in many proteins with very diverse …
a sandwich with two layers of β-sheets that is present in many proteins with very diverse …