Multiscale plant modeling: from genome to phenome and beyond
ML Matthews, A Marshall-Colón - Emerging topics in life …, 2021 - portlandpress.com
Plants are complex organisms that adapt to changes in their environment using an array of
regulatory mechanisms that span across multiple levels of biological organization. Due to …
regulatory mechanisms that span across multiple levels of biological organization. Due to …
Leaf energy balance requires mitochondrial respiration and export of chloroplast NADPH in the light
Key aspects of leaf mitochondrial metabolism in the light remain unresolved. For example,
there is debate about the relative importance of exporting reducing equivalents from …
there is debate about the relative importance of exporting reducing equivalents from …
Green pathways: metabolic network analysis of plant systems
LM Dersch, V Beckers, C Wittmann - Metabolic engineering, 2016 - Elsevier
Metabolic engineering of plants with enhanced crop yield and value-added compositional
traits is particularly challenging as they probably exhibit the highest metabolic network …
traits is particularly challenging as they probably exhibit the highest metabolic network …
A method of accounting for enzyme costs in flux balance analysis reveals alternative pathways and metabolite stores in an illuminated Arabidopsis leaf
CYM Cheung, RG Ratcliffe, LJ Sweetlove - Plant Physiology, 2015 - academic.oup.com
Flux balance analysis of plant metabolism is an established method for predicting metabolic
flux phenotypes and for exploring the way in which the plant metabolic network delivers …
flux phenotypes and for exploring the way in which the plant metabolic network delivers …
The first multi-tissue genome-scale metabolic model of a woody plant highlights suberin biosynthesis pathways in Quercus suber
E Cunha, M Silva, I Chaves, H Demirci… - PLoS Computational …, 2023 - journals.plos.org
Over the last decade, genome-scale metabolic models have been increasingly used to study
plant metabolic behaviour at the tissue and multi-tissue level under different environmental …
plant metabolic behaviour at the tissue and multi-tissue level under different environmental …
Stoichiometric analysis of the energetics and metabolic impact of photorespiration in C3 plants
Analysis of the impact of photorespiration on plant metabolism is usually based on manual
inspection of small network diagrams. Here we create a structural metabolic model that …
inspection of small network diagrams. Here we create a structural metabolic model that …
Biochemical characteristics and a genome-scale metabolic model of an indian euryhaline cyanobacterium with high polyglucan content
A Ahmad, R Pathania, S Srivastava - Metabolites, 2020 - mdpi.com
Marine cyanobacteria are promising microbes to capture and convert atmospheric CO2 and
light into biomass and valuable industrial bio-products. Yet, reports on metabolic …
light into biomass and valuable industrial bio-products. Yet, reports on metabolic …
Modeling rice metabolism: from elucidating environmental effects on cellular phenotype to guiding crop improvement
M Lakshmanan, CYM Cheung, B Mohanty… - Frontiers in Plant …, 2016 - frontiersin.org
Crop productivity is severely limited by various biotic and abiotic stresses. Thus, it is highly
needed to understand the underlying mechanisms of environmental stress response and …
needed to understand the underlying mechanisms of environmental stress response and …
Mathematical models of plant metabolism
H Shi, J Schwender - Current Opinion in Biotechnology, 2016 - Elsevier
Highlights•The number of published genome-derived models of plant metabolism is fast
increasing.•However, plant genomes are still considered to be vastly underexplored.• …
increasing.•However, plant genomes are still considered to be vastly underexplored.• …
Environment-coupled models of leaf metabolism
N Töpfer - Biochemical Society Transactions, 2021 - portlandpress.com
The plant leaf is the main site of photosynthesis. This process converts light energy and
inorganic nutrients into chemical energy and organic building blocks for the biosynthesis …
inorganic nutrients into chemical energy and organic building blocks for the biosynthesis …