Data mining/machine learning methods in foodomics

AM Jimenez-Carvelo, L Cuadros-Rodríguez - Current Opinion in Food …, 2021 - Elsevier
Highlights•The terms used in foodomic data analysis are discussed and defined.•Data
analysis step is described when the untargeted approach is employed.•The main data …

Metabolomics: towards acceleration of antibacterial plant-based leads discovery

E Sieniawska, MI Georgiev - Phytochemistry Reviews, 2022 - Springer
The wide and not yet fully uncovered potential of plant secondary metabolites make plants a
rich source of drug leads. Metabolomics enables the study of the metabolic perturbations …

Life beyond the Tanimoto coefficient: similarity measures for interaction fingerprints

A Rácz, D Bajusz, K Héberger - Journal of cheminformatics, 2018 - Springer
Background Interaction fingerprints (IFP) have been repeatedly shown to be valuable tools
in virtual screening to identify novel hit compounds that can subsequently be optimized to …

Extended similarity indices: the benefits of comparing more than two objects simultaneously. Part 1: Theory and characteristics

RA Miranda-Quintana, D Bajusz, A Rácz… - Journal of …, 2021 - Springer
Quantification of the similarity of objects is a key concept in many areas of computational
science. This includes cheminformatics, where molecular similarity is usually quantified …

Diversity and chemical library networks of large data sets

TB Dunn, GM Seabra, TD Kim… - Journal of Chemical …, 2021 - ACS Publications
The quantification of chemical diversity has many applications in drug discovery, organic
chemistry, food, and natural product chemistry, to name a few. As the size of the chemical …

Extended continuous similarity indices: theory and application for QSAR descriptor selection

A Rácz, TB Dunn, D Bajusz, TD Kim… - Journal of Computer …, 2022 - Springer
Extended (or n-ary) similarity indices have been recently proposed to extend the
comparative analysis of binary strings. Going beyond the traditional notion of pairwise …

Intercorrelation limits in molecular descriptor preselection for QSAR/QSPR

A Rácz, D Bajusz, K Héberger - Molecular informatics, 2019 - Wiley Online Library
QSAR/QSPR (quantitative structure‐activity/property relationship) modeling has been a
prevalent approach in various, overlapping sub‐fields of computational, medicinal and …

Differential consistency analysis: which similarity measures can be applied in drug discovery?

RA Miranda‐Quintana, D Bajusz, A Rácz… - Molecular …, 2021 - Wiley Online Library
Similarity measures are widely used in various areas from taxonomy to cheminformatics. To
this end, a large number of similarity and distance measures (or, collectively, comparative …

[HTML][HTML] Extended many-item similarity indices for sets of nucleotide and protein sequences

D Bajusz, RA Miranda-Quintana, A Rácz… - Computational and …, 2021 - Elsevier
Quantification of similarities between protein sequences or DNA/RNA strands is a (sub-) task
that is ubiquitously present in bioinformatics workflows, and is usually accomplished by …

Comparison of sensory evaluation techniques for Hungarian wines

Z Guld, D Nyitrainé Sárdy, A Gere… - Journal of …, 2020 - Wiley Online Library
The aim of this study was to compare different Hungarian Kadarka, Kékfrankos, and
Cabernet franc wines produced and aged by the same methods and to compare two types of …