The T-box gene family: emerging roles in development, stem cells and cancer

VE Papaioannou - Development, 2014 - journals.biologists.com
The T-box family of transcription factors exhibits widespread involvement throughout
development in all metazoans. T-box proteins are characterized by a DNA-binding motif …

Historical evolution of spheroids and organoids, and possibilities of use in life sciences and medicine

ME Sakalem, MT De Sibio, FAS da Costa… - Biotechnology …, 2021 - Wiley Online Library
Background An impressive percentage of biomedical advances were achieved through
animal research and cell culture investigations. For drug testing and disease researches …

WhichTF is functionally important in your open chromatin data?

Y Tanigawa, ES Dyer, G Bejerano - PLOS Computational Biology, 2022 - journals.plos.org
We present WhichTF, a computational method to identify functionally important transcription
factors (TFs) from chromatin accessibility measurements. To rank TFs, WhichTF applies an …

Resolving early mesoderm diversification through single-cell expression profiling

A Scialdone, Y Tanaka, W Jawaid, V Moignard… - Nature, 2016 - nature.com
In mammals, specification of the three major germ layers occurs during gastrulation, when
cells ingressing through the primitive streak differentiate into the precursor cells of major …

NeuroD1 reprograms chromatin and transcription factor landscapes to induce the neuronal program

A Pataskar, J Jung, P Smialowski, F Noack… - The EMBO …, 2016 - embopress.org
Cell fate specification relies on the action of critical transcription factors that become
available at distinct stages of embryonic development. One such factor is NeuroD1, which is …

Human pluripotent stem cell-derived acinar/ductal organoids generate human pancreas upon orthotopic transplantation and allow disease modelling

M Hohwieler, A Illing, PC Hermann, T Mayer… - Gut, 2017 - gut.bmj.com
Objective The generation of acinar and ductal cells from human pluripotent stem cells
(PSCs) is a poorly studied process, although various diseases arise from this compartment …

[PDF][PDF] Controlling expansion and cardiomyogenic differentiation of human pluripotent stem cells in scalable suspension culture

H Kempf, R Olmer, C Kropp, M Rückert, M Jara-Avaca… - Stem cell reports, 2014 - cell.com
To harness the potential of human pluripotent stem cells (hPSCs), an abundant supply of
their progenies is required. Here, hPSC expansion as matrix-independent aggregates in …

Loss of ATM accelerates pancreatic cancer formation and epithelial–mesenchymal transition

R Russell, L Perkhofer, S Liebau, Q Lin… - Nature …, 2015 - nature.com
Pancreatic ductal adenocarcinoma (PDAC) is associated with accumulation of particular
oncogenic mutations and recent genetic sequencing studies have identified ataxia …

Sperm is epigenetically programmed to regulate gene transcription in embryos

M Teperek, A Simeone, V Gaggioli, K Miyamoto… - Genome …, 2016 - genome.cshlp.org
For a long time, it has been assumed that the only role of sperm at fertilization is to introduce
the male genome into the egg. Recently, ideas have emerged that the epigenetic state of the …

The miR-17-92 cluster counteracts quiescence and chemoresistance in a distinct subpopulation of pancreatic cancer stem cells

M Cioffi, SM Trabulo, Y Sanchez-Ripoll… - Gut, 2015 - gut.bmj.com
Objective Cancer stem cells (CSCs) represent the root of many solid cancers including
pancreatic ductal adenocarcinoma, are highly chemoresistant and represent the cellular …