Recent advances in the characterization of essential genes and development of a database of essential genes

YT Liang, H Luo, Y Lin, F Gao - Imeta, 2024 - Wiley Online Library
Over the past few decades, there has been a significant interest in the study of essential
genes, which are crucial for the survival of an organism under specific environmental …

[HTML][HTML] Computational Systems and Network Biology Perspective: Understanding Klebsiella pneumoniae Infection Mechanisms

M Mazaya, NSD Panjaitan, AK Hayati - The Microbe, 2024 - Elsevier
Klebsiella pneumoniae (K. pneumoniae) is a pathogen that has been identified as the
leading cause of pneumonia and septicemia worldwide, compounded by its multi-drug …

From genome to evolution: investigating type II methylotrophs using a pangenomic analysis

D Samanta, S Rauniyar, P Saxena, RK Sani - Msystems, 2024 - Am Soc Microbiol
ABSTRACT A comprehensive pangenomic approach was employed to analyze the
genomes of 75 type II methylotrophs spanning various genera. Our investigation revealed …

Genome-Wide Computational Prediction and Analysis of Noncoding RNAs in Oleidesulfovibrio alaskensis G20

RN Singh, RK Sani - Microorganisms, 2024 - mdpi.com
Noncoding RNAs (ncRNAs) play key roles in the regulation of important pathways, including
cellular growth, stress management, signaling, and biofilm formation. Sulfate-reducing …

Multi-omics analyses provide insights into the sulfur metabolism of a novel deep-sea sulfate-reducing bacterium

C Wang, R Zheng, C Sun - iScience, 2024 - cell.com
Sulfate-reducing bacteria (SRB) are ubiquitously distributed across various biospheres and
play key roles in global sulfur and carbon cycles. However, few deep-sea SRB have been …

Genome wide computational prediction and analysis of noncoding genome of corrosive biofilm forming Oleidesulfovibrio alaskensis G20

RN Singh, EZ Gnimpieba… - 2023 IEEE International …, 2023 - ieeexplore.ieee.org
Biofilm, is a special-complex organization of bacterial cells with multiple layers, formed in
certain environmental conditions. In the complex biofilm different bacterial cells perform …

Convergence Research and Training in Computational Bioengineering: A Case Study on AI/ML-Driven Biofilm–Material Interaction Discovery

JLS Zylla, AB Bomgni, RK Sani… - Biomedical Engineering …, 2024 - Springer
Historically, research disciplines have successfully operated independently. However, the
emergence of transdisciplinary research has led to convergence methodologies, resulting in …