Rice functional genomics: decades' efforts and roads ahead

R Chen, Y Deng, Y Ding, J Guo, J Qiu, B Wang… - Science China Life …, 2022 - Springer
Rice (Oryza sativa L.) is one of the most important crops in the world. Since the completion of
rice reference genome sequences, tremendous progress has been achieved in …

Plant ABC transporters enable many unique aspects of a terrestrial plant's lifestyle

JU Hwang, WY Song, D Hong, D Ko, Y Yamaoka… - Molecular plant, 2016 - cell.com
Terrestrial plants have two to four times more ATP-binding cassette (ABC) transporter genes
than other organisms, including their ancestral microalgae. Recent studies found that plants …

A graph-based genome and pan-genome variation of the model plant Setaria

Q He, S Tang, H Zhi, J Chen, J Zhang, H Liang… - Nature …, 2023 - nature.com
Setaria italica (foxtail millet), a founder crop of East Asian agriculture, is a model plant for C4
photosynthesis and developing approaches to adaptive breeding across multiple climates …

The Chinese pine genome and methylome unveil key features of conifer evolution

S Niu, J Li, W Bo, W Yang, A Zuccolo, S Giacomello… - Cell, 2022 - cell.com
Conifers dominate the world's forest ecosystems and are the most widely planted tree
species. Their giant and complex genomes present great challenges for assembling a …

[HTML][HTML] Genomic insights into the recent chromosome reduction of autopolyploid sugarcane Saccharum spontaneum

Q Zhang, Y Qi, H Pan, H Tang, G Wang, X Hua… - Nature Genetics, 2022 - nature.com
Saccharum spontaneum is a founding Saccharum species and exhibits wide variation in
ploidy levels. We have assembled a high-quality autopolyploid genome of S. spontaneum …

High-frequency synthetic apomixis in hybrid rice

A Vernet, D Meynard, Q Lian, D Mieulet… - Nature …, 2022 - nature.com
Introducing asexual reproduction through seeds–apomixis–into crop species could
revolutionize agriculture by allowing F1 hybrids with enhanced yield and stability to be …

[HTML][HTML] A natural allele of a transcription factor in rice confers broad-spectrum blast resistance

W Li, Z Zhu, M Chern, J Yin, C Yang, L Ran, M Cheng… - Cell, 2017 - cell.com
Rice feeds half the world's population, and rice blast is often a destructive disease that
results in significant crop loss. Non-race-specific resistance has been more effective in …

[PDF][PDF] Genome-wide association study using whole-genome sequencing rapidly identifies new genes influencing agronomic traits in rice

K Yano, E Yamamoto, K Aya, H Takeuchi, P Lo, L Hu… - Nature …, 2016 - nature.com
A genome-wide association study (GWAS) can be a powerful tool for the identification of
genes associated with agronomic traits in crop species, but it is often hindered by population …

Widespread natural variation of DNA methylation within angiosperms

CE Niederhuth, AJ Bewick, L Ji, MS Alabady, KD Kim… - Genome biology, 2016 - Springer
Background DNA methylation is an important feature of plant epigenomes, involved in the
formation of heterochromatin and affecting gene expression. Extensive variation of DNA …

Improvement of the Oryza sativa Nipponbare reference genome using next generation sequence and optical map data

Y Kawahara, M de la Bastide, JP Hamilton, H Kanamori… - Rice, 2013 - Springer
Background Rice research has been enabled by access to the high quality reference
genome sequence generated in 2005 by the International Rice Genome Sequencing Project …