Rice functional genomics: decades' efforts and roads ahead
Rice (Oryza sativa L.) is one of the most important crops in the world. Since the completion of
rice reference genome sequences, tremendous progress has been achieved in …
rice reference genome sequences, tremendous progress has been achieved in …
Plant ABC transporters enable many unique aspects of a terrestrial plant's lifestyle
Terrestrial plants have two to four times more ATP-binding cassette (ABC) transporter genes
than other organisms, including their ancestral microalgae. Recent studies found that plants …
than other organisms, including their ancestral microalgae. Recent studies found that plants …
A graph-based genome and pan-genome variation of the model plant Setaria
Setaria italica (foxtail millet), a founder crop of East Asian agriculture, is a model plant for C4
photosynthesis and developing approaches to adaptive breeding across multiple climates …
photosynthesis and developing approaches to adaptive breeding across multiple climates …
The Chinese pine genome and methylome unveil key features of conifer evolution
S Niu, J Li, W Bo, W Yang, A Zuccolo, S Giacomello… - Cell, 2022 - cell.com
Conifers dominate the world's forest ecosystems and are the most widely planted tree
species. Their giant and complex genomes present great challenges for assembling a …
species. Their giant and complex genomes present great challenges for assembling a …
[HTML][HTML] Genomic insights into the recent chromosome reduction of autopolyploid sugarcane Saccharum spontaneum
Saccharum spontaneum is a founding Saccharum species and exhibits wide variation in
ploidy levels. We have assembled a high-quality autopolyploid genome of S. spontaneum …
ploidy levels. We have assembled a high-quality autopolyploid genome of S. spontaneum …
High-frequency synthetic apomixis in hybrid rice
A Vernet, D Meynard, Q Lian, D Mieulet… - Nature …, 2022 - nature.com
Introducing asexual reproduction through seeds–apomixis–into crop species could
revolutionize agriculture by allowing F1 hybrids with enhanced yield and stability to be …
revolutionize agriculture by allowing F1 hybrids with enhanced yield and stability to be …
[HTML][HTML] A natural allele of a transcription factor in rice confers broad-spectrum blast resistance
W Li, Z Zhu, M Chern, J Yin, C Yang, L Ran, M Cheng… - Cell, 2017 - cell.com
Rice feeds half the world's population, and rice blast is often a destructive disease that
results in significant crop loss. Non-race-specific resistance has been more effective in …
results in significant crop loss. Non-race-specific resistance has been more effective in …
[PDF][PDF] Genome-wide association study using whole-genome sequencing rapidly identifies new genes influencing agronomic traits in rice
K Yano, E Yamamoto, K Aya, H Takeuchi, P Lo, L Hu… - Nature …, 2016 - nature.com
A genome-wide association study (GWAS) can be a powerful tool for the identification of
genes associated with agronomic traits in crop species, but it is often hindered by population …
genes associated with agronomic traits in crop species, but it is often hindered by population …
Widespread natural variation of DNA methylation within angiosperms
Background DNA methylation is an important feature of plant epigenomes, involved in the
formation of heterochromatin and affecting gene expression. Extensive variation of DNA …
formation of heterochromatin and affecting gene expression. Extensive variation of DNA …
Improvement of the Oryza sativa Nipponbare reference genome using next generation sequence and optical map data
Y Kawahara, M de la Bastide, JP Hamilton, H Kanamori… - Rice, 2013 - Springer
Background Rice research has been enabled by access to the high quality reference
genome sequence generated in 2005 by the International Rice Genome Sequencing Project …
genome sequence generated in 2005 by the International Rice Genome Sequencing Project …