[HTML][HTML] Human-in-the-loop machine learning: a state of the art

E Mosqueira-Rey, E Hernández-Pereira… - Artificial Intelligence …, 2023 - Springer
Researchers are defining new types of interactions between humans and machine learning
algorithms generically called human-in-the-loop machine learning. Depending on who is in …

[HTML][HTML] From bulk, single-cell to spatial RNA sequencing

X Li, CY Wang - International journal of oral science, 2021 - nature.com
RNA sequencing (RNAseq) can reveal gene fusions, splicing variants, mutations/indels in
addition to differential gene expression, thus providing a more complete genetic picture than …

Interpreting interpretability: understanding data scientists' use of interpretability tools for machine learning

H Kaur, H Nori, S Jenkins, R Caruana… - Proceedings of the …, 2020 - dl.acm.org
Machine learning (ML) models are now routinely deployed in domains ranging from criminal
justice to healthcare. With this newfound ubiquity, ML has moved beyond academia and …

Using DeepLabCut for 3D markerless pose estimation across species and behaviors

T Nath, A Mathis, AC Chen, A Patel, M Bethge… - Nature protocols, 2019 - nature.com
Noninvasive behavioral tracking of animals during experiments is critical to many scientific
pursuits. Extracting the poses of animals without using markers is often essential to …

Quantifying behavior to understand the brain

TD Pereira, JW Shaevitz, M Murthy - Nature neuroscience, 2020 - nature.com
Over the past years, numerous methods have emerged to automate the quantification of
animal behavior at a resolution not previously imaginable. This has opened up a new field of …

[HTML][HTML] The emergence and influence of internal states

SW Flavell, N Gogolla, M Lovett-Barron, M Zelikowsky - Neuron, 2022 - cell.com
Animal behavior is shaped by a variety of" internal states"—partially hidden variables that
profoundly shape perception, cognition, and action. The neural basis of internal states, such …

[HTML][HTML] Natural behavior is the language of the brain

CT Miller, D Gire, K Hoke, AC Huk, D Kelley… - Current Biology, 2022 - cell.com
The breadth and complexity of natural behaviors inspires awe. Understanding how our
perceptions, actions, and internal thoughts arise from evolved circuits in the brain has …

Fast animal pose estimation using deep neural networks

TD Pereira, DE Aldarondo, L Willmore, M Kislin… - Nature …, 2019 - nature.com
The need for automated and efficient systems for tracking full animal pose has increased
with the complexity of behavioral data and analyses. Here we introduce LEAP (LEAP …

[HTML][HTML] Computational neuroethology: a call to action

SR Datta, DJ Anderson, K Branson, P Perona, A Leifer - Neuron, 2019 - cell.com
The brain is worthy of study because it is in charge of behavior. A flurry of recent technical
advances in measuring and quantifying naturalistic behaviors provide an important …

[HTML][HTML] A primer on motion capture with deep learning: principles, pitfalls, and perspectives

A Mathis, S Schneider, J Lauer, MW Mathis - Neuron, 2020 - cell.com
Extracting behavioral measurements non-invasively from video is stymied by the fact that it is
a hard computational problem. Recent advances in deep learning have tremendously …