A task-specific encoding algorithm for RNAs and RNA-associated interactions based on convolutional autoencoder

Y Wang, Z Pan, M Mou, W Xia, H Zhang… - Nucleic acids …, 2023 - academic.oup.com
RNAs play essential roles in diverse physiological and pathological processes by interacting
with other molecules (RNA/protein/compound), and various computational methods are …

Remarkable mitochondrial genome heterogeneity in Meniocus linifolius (Brassicaceae)

J Liu, JY Hu, DZ Li - Plant Cell Reports, 2024 - Springer
Key message Detailed analyses of 16 genomes identified a remarkable acceleration of
mutation rate, hence mitochondrial sequence and structural heterogeneity, in Meniocus …

Assembly of the Complete Mitochondrial Genome of Pereskia aculeata Revealed That Two Pairs of Repetitive Elements Mediated the Recombination of the Genome

X Zhang, Y Shan, J Li, Q Qin, J Yu, H Deng - International Journal of …, 2023 - mdpi.com
Pereskia aculeata is a potential new crop species that has both food and medicinal
(antinociceptive activity) properties. However, comprehensive genomic research on P …

Unraveling the complex evolutionary features of the Cinnamomum camphora mitochondrial genome

F Han, C Bi, Y Zhao, M Gao, Y Wang, Y Chen - Plant Cell Reports, 2024 - Springer
Key message We reported the mitochondrial genome of Cinnamomum camphora for the first
time, revealing frequent rearrangement events in the non-coding regions of Magnoliids …

[HTML][HTML] DeepMC-iNABP: Deep learning for multiclass identification and classification of nucleic acid-binding proteins

F Cui, S Li, Z Zhang, M Sui, C Cao, AEL Hesham… - Computational and …, 2022 - Elsevier
Nucleic acid-binding proteins (NABPs), including DNA-binding proteins (DBPs) and RNA-
binding proteins (RBPs), play vital roles in gene expression. Accurate identification of these …

Genetic diversity of Coffea arabica L. mitochondrial genomes caused by repeat- mediated recombination and RNA editing

Y Ni, X Zhang, J Li, Q Lu, H Chen, B Ma… - Frontiers in Plant …, 2023 - frontiersin.org
Background Coffea arabica L. is one of the most important crops widely cultivated in 70
countries across Asia, Africa, and Latin America. Mitochondria are essential organelles that …

Assembly and comparative analysis of the complete mitochondrial genome of Viburnum chinshanense

H Zhu, Y Shan, J Li, X Zhang, J Yu, H Wang - BMC Plant Biology, 2023 - Springer
Background Viburnum chinshanense is an endemic species found exclusively in the North-
Central and South-Central regions of China. This species is a lush garden ornamental tree …

Assembly and comparative analysis of the complete mitochondrial genome of Fritillaria ussuriensis Maxim. (Liliales: Liliaceae), an endangered medicinal plant

P Xie, J Wu, M Lu, T Tian, D Wang, Z Luo, D Yang, L Li… - BMC genomics, 2024 - Springer
Background Fritillaria ussuriensis is an endangered medicinal plant known for its notable
therapeutic properties. Unfortunately, its population has drastically declined due to the …

The assembly and comparative analysis of the first complete mitogenome of Lindera aggregata

Y Shi, Z Chen, J Jiang, W Wu, W Yu, S Zhang… - Frontiers in Plant …, 2024 - frontiersin.org
Lindera aggregata, a member belongs to the genus Lindera of Lauraceae family. Its roots
and leaves have been used as traditional Chinese medicine or functional food for thousands …

Assembly and Comparative Analysis of the Complete Mitochondrial Genome of Ilex rotunda Thunb.

Y Wang, G Cui, K He, K Xu, W Liu, Y Wang, Z Wang… - Forests, 2024 - mdpi.com
Ilex rotunda Thunb. stands as a representative tree species in subtropical evergreen broad-
leaved forests, widely distributed across southeast Asia. This species holds significant value …