Protein–small molecule interactions in native mass spectrometry

JL Bennett, GTH Nguyen, WA Donald - Chemical Reviews, 2021 - ACS Publications
Small molecule drug discovery has been propelled by the continual development of novel
scientific methodologies to occasion therapeutic advances. Although established …

[HTML][HTML] Affinity measurement of strong ligands with NMR spectroscopy: Limitations and ways to overcome them

C Dalvit, I Gmür, P Rößler, AD Gossert - Progress in Nuclear Magnetic …, 2023 - Elsevier
NMR spectroscopy is currently extensively used in binding assays for hit identification, but its
use in dissociation constant determination is more limited when compared to other …

Allosteric modulator discovery: from serendipity to structure-based design

S Lu, X He, D Ni, J Zhang - Journal of medicinal chemistry, 2019 - ACS Publications
Allosteric modulators bound to structurally diverse allosteric sites can achieve better
pharmacological advantages than orthosteric ligands. The discovery of allosteric …

Along the allostery stream: Recent advances in computational methods for allosteric drug discovery

D Ni, Z Chai, Y Wang, M Li, Z Yu, Y Liu… - Wiley …, 2022 - Wiley Online Library
Allostery is a universal, biological phenomenon in which orthosteric sites are fine‐tuned by
topologically distal allosteric sites triggered by perturbations, such as ligand binding, residue …

[HTML][HTML] Integrated computational approaches and tools for allosteric drug discovery

O Sheik Amamuddy, W Veldman, C Manyumwa… - International journal of …, 2020 - mdpi.com
Understanding molecular mechanisms underlying the complexity of allosteric regulation in
proteins has attracted considerable attention in drug discovery due to the benefits and …

Exploring and learning the universe of protein allostery using artificial intelligence augmented biophysical and computational approaches

S Agajanian, M Alshahrani, F Bai, P Tao… - Journal of chemical …, 2023 - ACS Publications
Allosteric mechanisms are commonly employed regulatory tools used by proteins to
orchestrate complex biochemical processes and control communications in cells. The …

[HTML][HTML] NMR methods for structural characterization of protein-protein complexes

JA Purslow, B Khatiwada, MJ Bayro… - Frontiers in molecular …, 2020 - frontiersin.org
Protein-protein interactions and the complexes thus formed are critical elements in a wide
variety of cellular events that require an atomic-level description to understand them in …

Enhanced specificity mutations perturb allosteric signaling in CRISPR-Cas9

L Nierzwicki, KW East, UN Morzan, PR Arantes… - Elife, 2021 - elifesciences.org
CRISPR-Cas9 (clustered regularly interspaced short palindromic repeat and associated
Cas9 protein) is a molecular tool with transformative genome editing capabilities. At the …

On the perturbation nature of allostery: sites, mutations, and signal modulation

E Guarnera, IN Berezovsky - Current opinion in structural biology, 2019 - Elsevier
Regardless of the diversity of systems, allosteic signalling is found to be always caused by
perturbations. This recurring trait of allostery serves as a foundation for developing different …

[HTML][HTML] Allosteric regulation at the crossroads of new technologies: multiscale modeling, networks, and machine learning

GM Verkhivker, S Agajanian, G Hu… - Frontiers in molecular …, 2020 - frontiersin.org
Allosteric regulation is a common mechanism employed by complex biomolecular systems
for regulation of activity and adaptability in the cellular environment, serving as an effective …