[HTML][HTML] Concepts in Boolean network modeling: What do they all mean?
Boolean network models are one of the simplest models to study complex dynamic behavior
in biological systems. They can be applied to unravel the mechanisms regulating the …
in biological systems. They can be applied to unravel the mechanisms regulating the …
Logical modeling and dynamical analysis of cellular networks
W Abou-Jaoudé, P Traynard, PT Monteiro… - Frontiers in …, 2016 - frontiersin.org
The logical (or logic) formalism is increasingly used to model regulatory and signaling
networks. Complementing these applications, several groups contributed various methods …
networks. Complementing these applications, several groups contributed various methods …
Community assessment to advance computational prediction of cancer drug combinations in a pharmacogenomic screen
The effectiveness of most cancer targeted therapies is short-lived. Tumors often develop
resistance that might be overcome with drug combinations. However, the number of possible …
resistance that might be overcome with drug combinations. However, the number of possible …
Patient-specific Boolean models of signalling networks guide personalised treatments
A Montagud, J Béal, L Tobalina, P Traynard… - Elife, 2022 - elifesciences.org
Prostate cancer is the second most occurring cancer in men worldwide. To better
understand the mechanisms of tumorigenesis and possible treatment responses, we …
understand the mechanisms of tumorigenesis and possible treatment responses, we …
CCSynergy: an integrative deep-learning framework enabling context-aware prediction of anti-cancer drug synergy
SR Hosseini, X Zhou - Briefings in bioinformatics, 2023 - academic.oup.com
Combination therapy is a promising strategy for confronting the complexity of cancer.
However, experimental exploration of the vast space of potential drug combinations is costly …
However, experimental exploration of the vast space of potential drug combinations is costly …
[HTML][HTML] Combined mechanistic modeling and machine-learning approaches in systems biology–A systematic literature review
Background and objective Mechanistic-based Model simulations (MM) are an effective
approach commonly employed, for research and learning purposes, to better investigate …
approach commonly employed, for research and learning purposes, to better investigate …
A network embedding framework based on integrating multiplex network for drug combination prediction
L Yu, M Xia, Q An - Briefings in bioinformatics, 2022 - academic.oup.com
Drug combination is a sensible strategy for disease treatment because it improves the
treatment efficacy and reduces concomitant side effects. Due to the large number of possible …
treatment efficacy and reduces concomitant side effects. Due to the large number of possible …
Network propagation predicts drug synergy in cancers
Combination therapies are commonly used to treat patients with complex diseases that
respond poorly to single-agent therapies. In vitro high-throughput drug screening is a …
respond poorly to single-agent therapies. In vitro high-throughput drug screening is a …
[HTML][HTML] Boolean modelling as a logic-based dynamic approach in systems medicine
Molecular mechanisms of health and disease are often represented as systems biology
diagrams, and the coverage of such representation constantly increases. These static …
diagrams, and the coverage of such representation constantly increases. These static …
Drug resistance mechanisms in colorectal cancer dissected with cell type–specific dynamic logic models
Genomic features are used as biomarkers of sensitivity to kinase inhibitors used widely to
treat human cancer, but effective patient stratification based on these principles remains …
treat human cancer, but effective patient stratification based on these principles remains …