Latest developments in molecular docking: 2010–2011 in review

E Yuriev, PA Ramsland - Journal of Molecular Recognition, 2013 - Wiley Online Library
The aim of docking is to accurately predict the structure of a ligand within the constraints of a
receptor binding site and to correctly estimate the strength of binding. We discuss, in detail …

Open challenges in structure-based virtual screening: Receptor modeling, target flexibility consideration and active site water molecules description

F Spyrakis, CN Cavasotto - Archives of biochemistry and biophysics, 2015 - Elsevier
Abstract Structure-based virtual screening is currently an established tool in drug lead
discovery projects. Although in the last years the field saw an impressive progress in terms …

In silico studies in drug research against neurodegenerative diseases

FR Makhouri, JB Ghasemi - Current neuropharmacology, 2018 - ingentaconnect.com
Background: Neurodegenerative diseases such as Alzheimer's disease (AD), amyotrophic
lateral sclerosis, Parkinson's disease (PD), spinal cerebellar ataxias, and spinal and bulbar …

Selecting, acquiring, and using small molecule libraries for high‐throughput screening

S Dandapani, G Rosse, N Southall… - Current protocols in …, 2012 - Wiley Online Library
The selection, acquisition, and use of high‐quality small molecule libraries for screening is
an essential aspect of drug discovery and chemical biology programs. Screening libraries …

Comparing neural-network scoring functions and the state of the art: applications to common library screening

JD Durrant, AJ Friedman, KE Rogers… - Journal of chemical …, 2013 - ACS Publications
We compare established docking programs, AutoDock Vina and Schrödinger's Glide, to
the recently published NNScore scoring functions. As expected, the best protocol to use in a …

CompScore: boosting structure-based virtual screening performance by incorporating docking scoring function components into consensus scoring

Y Perez-Castillo, S Sotomayor-Burneo… - Journal of chemical …, 2019 - ACS Publications
Consensus scoring has become a commonly used strategy within structure-based virtual
screening (VS) workflows with improved performance compared to those based in a single …

Structure–activity relationship studies of sulfonylpiperazine analogues as novel negative allosteric modulators of human neuronal nicotinic receptors

BJ Henderson, DJ Carper… - Journal of medicinal …, 2011 - ACS Publications
Neuronal nicotinic receptors have been implicated in several diseases and disorders such
as autism, Alzheimer's disease, Parkinson's disease, epilepsy, and various forms of …

[HTML][HTML] Identification by virtual screening and functional characterisation of novel positive and negative allosteric modulators of the α7 nicotinic acetylcholine receptor

CLC Smelt, VR Sanders, J Newcombe, RP Burt… - …, 2018 - Elsevier
Several previous studies have demonstrated that the activity of neurotransmitters acting on
ligand-gated ion channels such as the nicotinic acetylcholine receptor (nAChR) can be …

Defining the putative inhibitory site for a selective negative allosteric modulator of human α4β2 neuronal nicotinic receptors

BJ Henderson, TF González-Cestari, B Yi… - ACS chemical …, 2012 - ACS Publications
Neuronal nicotinic receptors (nAChRs) have been implicated in several diseases and
disorders such as autism spectrum disorders, Alzheimer's disease, Parkinson's disease …

Pharmacological characterisation of pentameric ligand-gated ion channels

VR Sanders - 2022 - discovery.ucl.ac.uk
This thesis primarily focuses on adding to the knowledge surrounding the pharmacological
characteristics of pentameric ligand-gated ion channels, that are involved in …