Gut bacteriophage: current understanding and challenges
TDS Sutton, C Hill - Frontiers in endocrinology, 2019 - frontiersin.org
The gut microbiome is widely accepted to have a significant impact on human health yet,
despite years of research on this complex ecosystem, the contributions of different forces …
despite years of research on this complex ecosystem, the contributions of different forces …
Viruses as winners in the game of life
Viruses are the most abundant and the most diverse life form. In this meta-analysis we
estimate that there are 4.80× 1031 phages on Earth. Further, 97% of viruses are in soil and …
estimate that there are 4.80× 1031 phages on Earth. Further, 97% of viruses are in soil and …
[HTML][HTML] Whole-virome analysis sheds light on viral dark matter in inflammatory bowel disease
The human gut virome is thought to significantly impact the microbiome and human health.
However, most virome analyses have been performed on a limited fraction of known viruses …
However, most virome analyses have been performed on a limited fraction of known viruses …
metaSPAdes: a new versatile metagenomic assembler
While metagenomics has emerged as a technology of choice for analyzing bacterial
populations, the assembly of metagenomic data remains challenging, thus stifling biological …
populations, the assembly of metagenomic data remains challenging, thus stifling biological …
Benchmarking viromics: an in silico evaluation of metagenome-enabled estimates of viral community composition and diversity
Background Viral metagenomics (viromics) is increasingly used to obtain uncultivated viral
genomes, evaluate community diversity, and assess ecological hypotheses. While viromic …
genomes, evaluate community diversity, and assess ecological hypotheses. While viromic …
Genome binning of viral entities from bulk metagenomics data
Despite the accelerating number of uncultivated virus sequences discovered in
metagenomics and their apparent importance for health and disease, the human gut virome …
metagenomics and their apparent importance for health and disease, the human gut virome …
Choice of assembly software has a critical impact on virome characterisation
Background The viral component of microbial communities plays a vital role in driving
bacterial diversity, facilitating nutrient turnover and shaping community composition. Despite …
bacterial diversity, facilitating nutrient turnover and shaping community composition. Despite …
Infection strategy and biogeography distinguish cosmopolitan groups of marine jumbo bacteriophages
AR Weinheimer, FO Aylward - The ISME Journal, 2022 - academic.oup.com
Recent research has underscored the immense diversity and key biogeochemical roles of
large DNA viruses in the ocean. Although they are important constituents of marine …
large DNA viruses in the ocean. Although they are important constituents of marine …
[HTML][HTML] Correlation between the gut microbiome and neurodegenerative diseases: a review of metagenomics evidence
X Liu, Y Liu, J Liu, H Zhang, C Shan… - Neural Regeneration …, 2024 - journals.lww.com
A growing body of evidence suggests that the gut microbiota contributes to the development
of neurodegenerative diseases via the microbiota-gut-brain axis. As a contributing factor …
of neurodegenerative diseases via the microbiota-gut-brain axis. As a contributing factor …
The emerging role of the gut virome in health and inflammatory bowel disease: challenges, covariates and a viral imbalance
D Jansen, J Matthijnssens - Viruses, 2023 - mdpi.com
Virome research is a rapidly growing area in the microbiome field that is increasingly
associated with human diseases, such as inflammatory bowel disease (IBD). Although …
associated with human diseases, such as inflammatory bowel disease (IBD). Although …