Towards a general-purpose foundation model for computational pathology

RJ Chen, T Ding, MY Lu, DFK Williamson, G Jaume… - Nature Medicine, 2024 - nature.com
Quantitative evaluation of tissue images is crucial for computational pathology (CPath) tasks,
requiring the objective characterization of histopathological entities from whole-slide images …

A general-purpose self-supervised model for computational pathology

RJ Chen, T Ding, MY Lu, DFK Williamson… - arXiv preprint arXiv …, 2023 - arxiv.org
Tissue phenotyping is a fundamental computational pathology (CPath) task in learning
objective characterizations of histopathologic biomarkers in anatomic pathology. However …

[HTML][HTML] Multi-scale relational graph convolutional network for multiple instance learning in histopathology images

R Bazargani, L Fazli, M Gleave, L Goldenberg… - Medical Image …, 2024 - Elsevier
Graph convolutional neural networks have shown significant potential in natural and
histopathology images. However, their use has only been studied in a single magnification …

TractGeoNet: A geometric deep learning framework for pointwise analysis of tract microstructure to predict language assessment performance

Y Chen, LR Zekelman, C Zhang, T Xue, Y Song… - Medical Image …, 2024 - Elsevier
We propose a geometric deep-learning-based framework, TractGeoNet, for performing
regression using diffusion magnetic resonance imaging (dMRI) tractography and associated …

SI-MIL: Taming Deep MIL for Self-Interpretability in Gigapixel Histopathology

S Kapse, P Pati, S Das, J Zhang… - Proceedings of the …, 2024 - openaccess.thecvf.com
Introducing interpretability and reasoning into Multiple Instance Learning (MIL) methods for
Whole Slide Image (WSI) analysis is challenging given the complexity of gigapixel slides …

Accelerating histopathology workflows with generative AI-based virtually multiplexed tumour profiling

P Pati, S Karkampouna, F Bonollo… - Nature Machine …, 2024 - nature.com
Understanding the spatial heterogeneity of tumours and its links to disease initiation and
progression is a cornerstone of cancer biology. Presently, histopathology workflows heavily …

Using multi-label ensemble CNN classifiers to mitigate labelling inconsistencies in patch-level Gleason grading

MA Butt, MF Kaleem, M Bilal, MS Hanif - Plos one, 2024 - journals.plos.org
This paper presents a novel approach to enhance the accuracy of patch-level Gleason
grading in prostate histopathology images, a critical task in the diagnosis and prognosis of …

Multi-scale feature alignment for continual learning of unlabeled domains

K Thandiackal, L Piccinelli, R Gupta… - … on Medical Imaging, 2024 - ieeexplore.ieee.org
Methods for unsupervised domain adaptation (UDA) help to improve the performance of
deep neural networks on unseen domains without any labeled data. Especially in medical …

HistoEM: A Pathologist-Guided and Explainable Workflow Using Histogram Embedding for Gland Classification

A Ferrero, E Ghelichkhan, H Manoochehri, MM Ho… - Modern Pathology, 2024 - Elsevier
Pathologists have, over several decades, developed criteria for diagnosing and grading
prostate cancer. However, this knowledge has not, so far, been included in the design of …

ProDiv: Prototype-driven consistent pseudo-bag division for whole-slide image classification

R Yang, P Liu, L Ji - Computer Methods and Programs in Biomedicine, 2024 - Elsevier
Abstract Background and Objective Pathology image classification is one of the most
essential auxiliary processes in cancer diagnosis. To overcome the problem of inadequate …