Transcriptomics in aquaculture: current status and applications

S Chandhini, VJ Rejish Kumar - Reviews in Aquaculture, 2019 - Wiley Online Library
Transcriptomics is the analysis of total RNA transcript in a cell, which gives a broad idea of
cellular processes that are active and dormant. Recent advancement in next‐generation …

Comparative mitogenomics of the Decapoda reveals evolutionary heterogeneity in architecture and composition

MH Tan, HM Gan, YP Lee, H Bracken-Grissom… - Scientific Reports, 2019 - nature.com
The emergence of cost-effective and rapid sequencing approaches has resulted in an
exponential rise in the number of mitogenomes on public databases in recent years …

The highly rearranged mitochondrial genomes of the crabs Maja crispata and Maja squinado (Majidae) and gene order evolution in Brachyura

A Basso, M Babbucci, M Pauletto, E Riginella… - Scientific reports, 2017 - nature.com
We sequenced the mitochondrial genomes of the spider crabs Maja crispata and Maja
squinado (Majidae, Brachyura). Both genomes contain the whole set of 37 genes …

A molecular phylogeny of Bopyroidea and Cryptoniscoidea (Crustacea: Isopoda)

CB Boyko, J Moss, JD Williams… - Systematics and …, 2013 - Taylor & Francis
Epicaridean isopods are parasitic on other crustaceans. They represent a diverse group of
highly derived taxa in two superfamilies and 10 families. Little work has been done on the …

Genome Sequences of Marine Shrimp Exopalaemon carinicauda Holthuis Provide Insights into Genome Size Evolution of Caridea

J Yuan, Y Gao, X Zhang, J Wei, C Liu, F Li, J Xiang - Marine Drugs, 2017 - mdpi.com
Crustacea, particularly Decapoda, contains many economically important species, such as
shrimps and crabs. Crustaceans exhibit enormous (nearly 500-fold) variability in genome …

MitoPhAST, a new automated mitogenomic phylogeny tool in the post-genomic era with a case study of 89 decapod mitogenomes including eight new freshwater …

MH Tan, HM Gan, MB Schultz, CM Austin - Molecular Phylogenetics and …, 2015 - Elsevier
The increased rate at which complete mitogenomes are being sequenced and their
increasing use for phylogenetic studies have resulted in a bioinformatic bottleneck in …

RNA-Seq analysis reveals genes associated with resistance to Taura syndrome virus (TSV) in the Pacific white shrimp Litopenaeus vannamei

S Sookruksawong, F Sun, Z Liu… - Developmental & …, 2013 - Elsevier
Outbreak of Taura syndrome virus (TSV) is one of the major pathogens of the Pacific white
shrimp Litopenaeus vannamei. Although selective breeding for improvement of TSV …

Evolution of mitochondrial genomes in Baikalian amphipods

EV Romanova, VV Aleoshin, RM Kamaltynov… - BMC genomics, 2016 - Springer
Abstract Background Amphipods (Crustacea) of Lake Baikal are a very numerous and
diverse group of invertebrates generally believed to have originated by adaptive radiation …

Digging deeper: new gene order rearrangements and distinct patterns of codons usage in mitochondrial genomes among shrimps from the Axiidea, Gebiidea and …

MH Tan, HM Gan, YP Lee, GCB Poore, CM Austin - PeerJ, 2017 - peerj.com
Background Whole mitochondrial DNA is being increasingly utilized for comparative
genomic and phylogenetic studies at deep and shallow evolutionary levels for a range of …

Phylogenetic relationships and adaptation in deep-sea carideans revealed by mitogenomes

D Kong, Z Gan, X Li - Gene, 2024 - Elsevier
The deep-sea environment is characterized by extreme and inhospitable conditions,
including oxygen depletion, low temperatures, high pressure, absence of light, and limited …