The emerging landscape of spatial profiling technologies
Improved scale, multiplexing and resolution are establishing spatial nucleic acid and protein
profiling methods as a major pillar for cellular atlas building of complex samples, from …
profiling methods as a major pillar for cellular atlas building of complex samples, from …
Spatial profiling technologies illuminate the tumor microenvironment
O Elhanani, R Ben-Uri, L Keren - Cancer cell, 2023 - cell.com
The tumor microenvironment (TME) is composed of many different cellular and acellular
components that together drive tumor growth, invasion, metastasis, and response to …
components that together drive tumor growth, invasion, metastasis, and response to …
Advances and prospects for the Human BioMolecular Atlas Program (HuBMAP)
Abstract The Human BioMolecular Atlas Program (HuBMAP) aims to create a multi-scale
spatial atlas of the healthy human body at single-cell resolution by applying advanced …
spatial atlas of the healthy human body at single-cell resolution by applying advanced …
OME-NGFF: a next-generation file format for expanding bioimaging data-access strategies
The rapid pace of innovation in biological imaging and the diversity of its applications have
prevented the establishment of a community-agreed standardized data format. We propose …
prevented the establishment of a community-agreed standardized data format. We propose …
Anatomical structures, cell types and biomarkers of the Human Reference Atlas
Abstract The Human Reference Atlas (HRA) aims to map all of the cells of the human body
to advance biomedical research and clinical practice. This Perspective presents …
to advance biomedical research and clinical practice. This Perspective presents …
OME-Zarr: a cloud-optimized bioimaging file format with international community support
J Moore, D Basurto-Lozada, S Besson… - Histochemistry and Cell …, 2023 - Springer
A growing community is constructing a next-generation file format (NGFF) for bioimaging to
overcome problems of scalability and heterogeneity. Organized by the Open Microscopy …
overcome problems of scalability and heterogeneity. Organized by the Open Microscopy …
Single cell spatial analysis reveals inflammatory foci of immature neutrophil and CD8 T cells in COVID-19 lungs
P Weeratunga, L Denney, JA Bull, E Repapi… - Nature …, 2023 - nature.com
Single cell spatial interrogation of the immune-structural interactions in COVID− 19 lungs is
challenging, mainly because of the marked cellular infiltrate and architecturally distorted …
challenging, mainly because of the marked cellular infiltrate and architecturally distorted …
MITI minimum information guidelines for highly multiplexed tissue images
The imminent release of tissue atlases combining multichannel microscopy with single-cell
sequencing and other omics data from normal and diseased specimens creates an urgent …
sequencing and other omics data from normal and diseased specimens creates an urgent …
Bioimage model zoo: a community-driven resource for accessible deep learning in bioimage analysis
W Ouyang, F Beuttenmueller, E Gómez-de-Mariscal… - BioRxiv, 2022 - biorxiv.org
Deep learning-based approaches are revolutionizing imaging-driven scientific research.
However, the accessibility and reproducibility of deep learning-based workflows for imaging …
However, the accessibility and reproducibility of deep learning-based workflows for imaging …
Data management strategy for a collaborative research center
The importance of effective research data management (RDM) strategies to support the
generation of Findable, Accessible, Interoperable, and Reusable (FAIR) neuroscience data …
generation of Findable, Accessible, Interoperable, and Reusable (FAIR) neuroscience data …