Pioneer transcription factors initiating gene network changes

KS Zaret - Annual review of genetics, 2020 - annualreviews.org
Pioneer transcription factors have the intrinsic biochemical ability to scan partial DNA
sequence motifs that are exposed on the surface of a nucleosome and thus access silent …

[HTML][HTML] Sex hormone fluctuation and increased female risk for depression and anxiety disorders: from clinical evidence to molecular mechanisms

M Kundakovic, D Rocks - Frontiers in neuroendocrinology, 2022 - Elsevier
Women are at twice the risk for anxiety and depression disorders as men are, although the
underlying biological factors and mechanisms are largely unknown. In this review, we …

[HTML][HTML] The glucose transporter GLUT3 controls T helper 17 cell responses through glycolytic-epigenetic reprogramming

SM Hochrein, H Wu, M Eckstein, L Arrigoni, JS Herman… - Cell metabolism, 2022 - cell.com
Metabolic reprogramming is a hallmark of activated T cells. The switch from oxidative
phosphorylation to aerobic glycolysis provides energy and intermediary metabolites for the …

Hyperglycemia induces trained immunity in macrophages and their precursors and promotes atherosclerosis

L Edgar, N Akbar, AT Braithwaite, T Krausgruber… - Circulation, 2021 - Am Heart Assoc
Background: Cardiovascular risk in diabetes remains elevated despite glucose-lowering
therapies. We hypothesized that hyperglycemia induces trained immunity in macrophages …

AP-1 transcription factors and the BAF complex mediate signal-dependent enhancer selection

T Vierbuchen, E Ling, CJ Cowley, CH Couch, X Wang… - Molecular cell, 2017 - cell.com
Enhancer elements are genomic regulatory sequences that direct the selective expression
of genes so that genetically identical cells can differentiate and acquire the highly …

ISSAAC-seq enables sensitive and flexible multimodal profiling of chromatin accessibility and gene expression in single cells

W Xu, W Yang, Y Zhang, Y Chen, N Hong, Q Zhang… - Nature …, 2022 - nature.com
Joint profiling of chromatin accessibility and gene expression from the same single cell
provides critical information about cell types in a tissue and cell states during a dynamic …

Exhaustion-associated regulatory regions in CD8+ tumor-infiltrating T cells

GP Mognol, R Spreafico, V Wong… - Proceedings of the …, 2017 - National Acad Sciences
T-cell exhaustion is a progressive loss of effector function and memory potential due to
persistent antigen exposure, which occurs in chronic viral infections and cancer. Here we …

Store-operated Ca2+ entry controls clonal expansion of T cells through metabolic reprogramming

M Vaeth, M Maus, S Klein-Hessling, E Freinkman… - Immunity, 2017 - cell.com
Summary Store-operated Ca 2+ entry (SOCE) is the main Ca 2+ influx pathway in
lymphocytes and is essential for T cell function and adaptive immunity. SOCE is mediated by …

A rapid and robust method for single cell chromatin accessibility profiling

X Chen, RJ Miragaia, KN Natarajan… - Nature …, 2018 - nature.com
The assay for transposase-accessible chromatin using sequencing (ATAC-seq) is widely
used to identify regulatory regions throughout the genome. However, very few studies have …

Epigenomics of human CD8 T cell differentiation and aging

DM Moskowitz, DW Zhang, B Hu, S Le Saux… - Science …, 2017 - science.org
The efficacy of the adaptive immune response declines markedly with age, but the cell-
intrinsic mechanisms driving immune aging in humans remain poorly understood. Immune …