Mechanisms and evolution of control logic in prokaryotic transcriptional regulation
SAFT van Hijum, MH Medema… - … and Molecular Biology …, 2009 - Am Soc Microbiol
SUMMARY A major part of organismal complexity and versatility of prokaryotes resides in
their ability to fine-tune gene expression to adequately respond to internal and external …
their ability to fine-tune gene expression to adequately respond to internal and external …
Glucose Transport in Escherichia coli: From Basics to Transport Engineering
OE Carreón-Rodríguez, G Gosset, A Escalante… - Microorganisms, 2023 - mdpi.com
Escherichia coli is the best-known model for the biotechnological production of many
biotechnological products, including housekeeping and heterologous primary and …
biotechnological products, including housekeeping and heterologous primary and …
Regulatory activity revealed by dynamic correlations in gene expression noise
Gene regulatory interactions are context dependent, active in some cellular states but not in
others. Stochastic fluctuations, or'noise', in gene expression propagate through active, but …
others. Stochastic fluctuations, or'noise', in gene expression propagate through active, but …
Metabolic engineering of Escherichia coli for production of L-aspartate and its derivative β-alanine with high stoichiometric yield
X Piao, L Wang, B Lin, H Chen, W Liu, Y Tao - Metabolic engineering, 2019 - Elsevier
L-aspartate is an important 4-carbon platform compound that can be used as the precursor
of numerous chemical products. The bioproduction of L-aspartate directly from biomass …
of numerous chemical products. The bioproduction of L-aspartate directly from biomass …
The incoherent feed‐forward loop can generate non‐monotonic input functions for genes
S Kaplan, A Bren, E Dekel, U Alon - Molecular systems biology, 2008 - embopress.org
Gene regulation networks contain recurring circuit patterns called network motifs. One of the
most common network motif is the incoherent type 1 feed‐forward loop (I1‐FFL), in which an …
most common network motif is the incoherent type 1 feed‐forward loop (I1‐FFL), in which an …
Glucose transport in Escherichia coli mutant strains with defects in sugar transport systems
S Steinsiek, K Bettenbrock - Journal of bacteriology, 2012 - Am Soc Microbiol
In Escherichia coli, several systems are known to transport glucose into the cytoplasm. The
main glucose uptake system under batch conditions is the glucose phosphoenolpyruvate …
main glucose uptake system under batch conditions is the glucose phosphoenolpyruvate …
Deciphering the transcriptional regulatory logic of amino acid metabolism
BK Cho, S Federowicz, YS Park, K Zengler… - Nature chemical …, 2012 - nature.com
Although metabolic networks have been reconstructed on a genome scale, the
corresponding reconstruction and integration of governing transcriptional regulatory …
corresponding reconstruction and integration of governing transcriptional regulatory …
Identification of stress‐related proteins in Escherichia coli using the pollutant cis‐dichloroethylene
Aims: To complement our proteome study, whole‐transcriptome analyses were utilized here
to identify proteins related to degrading cis‐1, 2‐dichloroethylene (cis‐DCE). Methods and …
to identify proteins related to degrading cis‐1, 2‐dichloroethylene (cis‐DCE). Methods and …
Gene dispensability in Escherichia coli grown in thirty different carbon environments
Central metabolism is a topic that has been studied for decades, and yet, this process is still
not fully understood in Escherichia coli, perhaps the most amenable and well-studied model …
not fully understood in Escherichia coli, perhaps the most amenable and well-studied model …
Simplified models of biological networks
The function of living cells is controlled by complex regulatory networks that are built of a
wide diversity of interacting molecular components. The sheer size and intricacy of …
wide diversity of interacting molecular components. The sheer size and intricacy of …