Supertrees based on the subtree prune-and-regraft distance
Supertree methods reconcile a set of phylogenetic trees into a single structure that is often
interpreted as a branching history of species. A key challenge is combining conflicting …
interpreted as a branching history of species. A key challenge is combining conflicting …
Exact solutions for species tree inference from discordant gene trees
Phylogenetic analysis has to overcome the grant challenge of inferring accurate species
trees from evolutionary histories of gene families (gene trees) that are discordant with the …
trees from evolutionary histories of gene families (gene trees) that are discordant with the …
COSPEDTree: COuplet Supertree by Equivalence Partitioning of taxa set and DAG formation
S Bhattacharyya, J Mukherjee - IEEE/ACM Transactions on …, 2014 - ieeexplore.ieee.org
From a set of phylogenetic trees with overlapping taxa set, a supertree exhibits evolutionary
relationships among all input taxa. The key is to resolve the contradictory relationships with …
relationships among all input taxa. The key is to resolve the contradictory relationships with …
Couplet supertree by equivalence partitioning of taxa set and dag formation
S Bhattacharyya, J Mukhopadhyay - … of the 5th ACM Conference on …, 2014 - dl.acm.org
From a given set of phylogenetic trees with overlapping taxa sets, a supertree describes
evolutionary relationships among the union of their constituent taxa sets. Individual taxa …
evolutionary relationships among the union of their constituent taxa sets. Individual taxa …
[PDF][PDF] Exact solutions for classic gene tree parsimony problems
Gene tree parsimony (GTP) problems seek a species tree that infers the fewest evolutionary
events necessary to explain discordance in a given collection of gene trees. Solving GTP …
events necessary to explain discordance in a given collection of gene trees. Solving GTP …