Structure, assembly, and function of tripartite efflux and type 1 secretion systems in gram-negative bacteria

I Alav, J Kobylka, MS Kuth, KM Pos, M Picard… - Chemical …, 2021 - ACS Publications
Tripartite efflux pumps and the related type 1 secretion systems (T1SSs) in Gram-negative
organisms are diverse in function, energization, and structural organization. They form …

A brief history of de novo protein design: minimal, rational, and computational

DN Woolfson - Journal of Molecular Biology, 2021 - Elsevier
Protein design has come of age, but how will it mature? In the 1980s and the 1990s, the
primary motivation for de novo protein design was to test our understanding of the …

DeepCoil—a fast and accurate prediction of coiled-coil domains in protein sequences

J Ludwiczak, A Winski, K Szczepaniak, V Alva… - …, 2019 - academic.oup.com
Motivation Coiled coils are protein structural domains that mediate a plethora of biological
interactions, and thus their reliable annotation is crucial for studies of protein structure and …

Socket2: a program for locating, visualizing and analyzing coiled-coil interfaces in protein structures

P Kumar, DN Woolfson - Bioinformatics, 2021 - academic.oup.com
Motivation Protein–protein interactions are central to all biological processes. One frequently
observed mode of such interactions is the α-helical coiled coil (CC). Thus, an ability to …

Coiled-coil domain-containing (CCDC) proteins: functional roles in general and male reproductive physiology

PP Priyanka, S Yenugu - Reproductive Sciences, 2021 - Springer
The coiled-coil domain-containing (CCDC) proteins have been implicated in a variety of
physiological and pathological processes. Their functional roles vary from their interaction …

Collapse transitions of proteins and the interplay among backbone, sidechain, and solvent interactions

AS Holehouse, RV Pappu - Annual Review of biophysics, 2018 - annualreviews.org
Proteins can collapse into compact globules or form expanded, solvent-accessible, coil-like
conformations. Additionally, they can fold into well-defined three-dimensional structures or …

Recognition of polymorphic Csd proteins determines sex in the honeybee

M Otte, O Netschitailo, S Weidtkamp-Peters… - Science …, 2023 - science.org
Sex in honeybees, Apis mellifera, is genetically determined by heterozygous versus
homo/hemizygous genotypes involving numerous alleles at the single complementary sex …

[HTML][HTML] Coiled coil-based therapeutics and drug delivery systems

J Utterström, S Naeimipour, R Selegård… - Advanced Drug Delivery …, 2021 - Elsevier
Coiled coils are characterized by an arrangement of two or more α-helices into a superhelix
and one of few protein motifs where the sequence-to-structure relationships to a large extent …

Membrane binding controls ordered self-assembly of animal septins

A Szuba, F Bano, G Castro-Linares, F Iv, M Mavrakis… - Elife, 2021 - elifesciences.org
Septins are conserved cytoskeletal proteins that regulate cell cortex mechanics. The
mechanisms of their interactions with the plasma membrane remain poorly understood …

De Novo-Designed α-Helical Barrels as Receptors for Small Molecules

F Thomas, WM Dawson, EJM Lang… - ACS Synthetic …, 2018 - ACS Publications
We describe de novo-designed α-helical barrels (αHBs) that bind and discriminate between
lipophilic biologically active molecules. αHBs have five or more α-helices arranged around …