The ecology and evolution of influenza viruses

M Wille, EC Holmes - Cold Spring …, 2020 - perspectivesinmedicine.cshlp.org
The patterns and processes of influenza virus evolution are of fundamental importance,
underpinning such traits as the propensity to emerge in new host species and the ability to …

Advances on the immunotoxicity of outdoor particulate matter: A focus on physical and chemical properties and respiratory defence mechanisms

E Nozza, S Valentini, G Melzi, R Vecchi… - Science of The Total …, 2021 - Elsevier
Particulate matter (PM) is acknowledged to have multiple detrimental effects on human
health. In this review, we report literature results on the possible link between outdoor PM …

Detection of influenza a virus in swine nasal swab samples with a wash-free magnetic bioassay and a handheld giant magnetoresistance sensing system

D Su, K Wu, VD Krishna, T Klein, J Liu, Y Feng… - Frontiers in …, 2019 - frontiersin.org
The dissemination of Influenza A virus (IAV) throughout the world has become one of the
main concerns for the health of both animals and human beings. An efficient and sensitive …

Virome heterogeneity and connectivity in waterfowl and shorebird communities

M Wille, M Shi, M Klaassen, AC Hurt… - The ISME …, 2019 - academic.oup.com
Abstract Models of host-microbe dynamics typically assume a single-host population
infected by a single pathogen. In reality, many hosts form multi-species aggregations and …

Avian influenza virus ecology and evolution through a climatic lens

CW Morin, B Stoner-Duncan, K Winker, M Scotch… - Environment …, 2018 - Elsevier
Avian influenza virus (AIV) is a major health threat to both avian and human populations.
The ecology of the virus is driven by numerous factors, including climate and avian migration …

Methods combining genomic and epidemiological data in the reconstruction of transmission trees: a systematic review

H Duault, B Durand, L Canini - Pathogens, 2022 - mdpi.com
In order to better understand transmission dynamics and appropriately target control and
preventive measures, studies have aimed to identify who-infected-whom in actual outbreaks …

Machine learning methods for predicting human-adaptive influenza a viruses based on viral nucleotide compositions

J Li, S Zhang, B Li, Y Hu, XP Kang… - Molecular biology …, 2020 - academic.oup.com
Each influenza pandemic was caused at least partly by avian-and/or swine-origin influenza
A viruses (IAVs). The timing of and the potential IAVs involved in the next pandemic are …

Complete genome sequencing of influenza A viruses within swine farrow-to-wean farms reveals the emergence, persistence, and subsidence of diverse viral …

A Diaz, D Marthaler, M Culhane, S Sreevatsan… - Journal of …, 2017 - Am Soc Microbiol
Influenza A viruses (IAVs) are endemic in swine and represent a public health risk. However,
there is limited information on the genetic diversity of swine IAVs within farrow-to-wean …

The dynamics of preferential host switching: host phylogeny as a key predictor of parasite distribution

J Engelstädter, NZ Fortuna - Evolution, 2019 - academic.oup.com
Parasites often jump to and become established in a new host species. There is much
evidence that the probability of such host shifts decreases with increasing phylogenetic …

The role of rodents in avian influenza outbreaks in poultry farms: a review

FC Velkers, SJ Blokhuis, EJB Veldhuis Kroeze… - Veterinary …, 2017 - Taylor & Francis
Wild migratory birds are associated with global avian influenza virus (AIV) spread. Although
direct contact with wild birds and contaminated fomites is unlikely in modern non-free range …