Integrating quantitative assays with biologically based mathematical modeling for predictive oncology
We provide an overview on the use of biological assays to calibrate and initialize
mechanism-based models of cancer phenomena. Although artificial intelligence methods …
mechanism-based models of cancer phenomena. Although artificial intelligence methods …
[HTML][HTML] Forecasting cellular states: from descriptive to predictive biology via single-cell multiomics
GL Stein-O'Brien, MC Ainslie, EJ Fertig - Current opinion in systems biology, 2021 - Elsevier
As the single cell field races to characterize each cell type, state, and behavior, the
complexity of the computational analysis approaches the complexity of the biological …
complexity of the computational analysis approaches the complexity of the biological …
[HTML][HTML] Integrating single cell sequencing with a spatial quantitative systems pharmacology model spQSP for personalized prediction of triple-negative breast cancer …
Response to cancer immunotherapies depends on the complex and dynamic interactions
between T cell recognition and killing of cancer cells that are counteracted through …
between T cell recognition and killing of cancer cells that are counteracted through …
Quantitative in vivo imaging to enable tumour forecasting and treatment optimization
Current clinical decision-making in oncology relies on averages of large patient populations
to both assess tumour status and treatment outcomes. However, cancers exhibit an inherent …
to both assess tumour status and treatment outcomes. However, cancers exhibit an inherent …
Towards an image-informed mathematical model of in vivo response to fractionated radiation therapy
Simple Summary Using medical imaging data and computational models, we develop a
modeling framework to provide personalized treatment response forecasts to fractionated …
modeling framework to provide personalized treatment response forecasts to fractionated …
Mathematical details on a cancer resistance model
JM Greene, C Sanchez-Tapia… - Frontiers in Bioengineering …, 2020 - frontiersin.org
One of the most important factors limiting the success of chemotherapy in cancer treatment is
the phenomenon of drug resistance. We have recently introduced a framework for …
the phenomenon of drug resistance. We have recently introduced a framework for …
Two-stage linked component analysis for joint decomposition of multiple biologically related data sets
Integrative analysis of multiple data sets has the potential of fully leveraging the vast amount
of high throughput biological data being generated. In particular such analysis will be …
of high throughput biological data being generated. In particular such analysis will be …