Integrating quantitative assays with biologically based mathematical modeling for predictive oncology

AS Kazerouni, M Gadde, A Gardner, DA Hormuth… - Iscience, 2020 - cell.com
We provide an overview on the use of biological assays to calibrate and initialize
mechanism-based models of cancer phenomena. Although artificial intelligence methods …

[HTML][HTML] Forecasting cellular states: from descriptive to predictive biology via single-cell multiomics

GL Stein-O'Brien, MC Ainslie, EJ Fertig - Current opinion in systems biology, 2021 - Elsevier
As the single cell field races to characterize each cell type, state, and behavior, the
complexity of the computational analysis approaches the complexity of the biological …

[HTML][HTML] Integrating single cell sequencing with a spatial quantitative systems pharmacology model spQSP for personalized prediction of triple-negative breast cancer …

S Zhang, C Gong, A Ruiz-Martinez, H Wang… - Immunoinformatics, 2021 - Elsevier
Response to cancer immunotherapies depends on the complex and dynamic interactions
between T cell recognition and killing of cancer cells that are counteracted through …

Quantitative in vivo imaging to enable tumour forecasting and treatment optimization

G Lorenzo, DA Hormuth II, AM Jarrett… - Cancer, complexity …, 2022 - Springer
Current clinical decision-making in oncology relies on averages of large patient populations
to both assess tumour status and treatment outcomes. However, cancers exhibit an inherent …

Towards an image-informed mathematical model of in vivo response to fractionated radiation therapy

DA Hormuth, AM Jarrett, T Davis, TE Yankeelov - Cancers, 2021 - mdpi.com
Simple Summary Using medical imaging data and computational models, we develop a
modeling framework to provide personalized treatment response forecasts to fractionated …

Mathematical details on a cancer resistance model

JM Greene, C Sanchez-Tapia… - Frontiers in Bioengineering …, 2020 - frontiersin.org
One of the most important factors limiting the success of chemotherapy in cancer treatment is
the phenomenon of drug resistance. We have recently introduced a framework for …

Two-stage linked component analysis for joint decomposition of multiple biologically related data sets

H Chen, B Caffo, G Stein-O'Brien, J Liu… - …, 2022 - academic.oup.com
Integrative analysis of multiple data sets has the potential of fully leveraging the vast amount
of high throughput biological data being generated. In particular such analysis will be …