A single-cell atlas of chromatin accessibility in mouse organogenesis
Organogenesis is a highly complex and precisely regulated process. Here we profiled the
chromatin accessibility in> 350,000 cells derived from 13 mouse embryos at four …
chromatin accessibility in> 350,000 cells derived from 13 mouse embryos at four …
Application of Single-Cell Assay for Transposase-Accessible Chromatin with High Throughput Sequencing in Plant Science: Advances, Technical Challenges, and …
C Lu, Y Wei, M Abbas, H Agula, E Wang… - International Journal of …, 2024 - mdpi.com
The Single-cell Assay for Transposase-Accessible Chromatin with high throughput
sequencing (scATAC-seq) has gained increasing popularity in recent years, allowing for …
sequencing (scATAC-seq) has gained increasing popularity in recent years, allowing for …
Mapping Cell Atlases at the Single‐Cell Level
Recent advancements in single‐cell technologies have led to rapid developments in the
construction of cell atlases. These atlases have the potential to provide detailed information …
construction of cell atlases. These atlases have the potential to provide detailed information …
The single-cell chromatin landscape in gonadal cell lineage specification
HC Suen, F Ou, K Miu, Z Wang, W Chan, J Liao - BMC genomics, 2024 - Springer
Gonad development includes sex determination and divergent maturation of the testes and
ovaries. Recent advances in measuring gene expression in single cells are providing new …
ovaries. Recent advances in measuring gene expression in single cells are providing new …
Ploidy inference from single-cell data: application to human and mouse cell atlases
F Takeuchi, N Kato - Genetics, 2024 - academic.oup.com
Ploidy is relevant to numerous biological phenomena, including development, metabolism,
and tissue regeneration. Single-cell RNA-seq and other omics studies are revolutionizing …
and tissue regeneration. Single-cell RNA-seq and other omics studies are revolutionizing …
Enhancing sensitivity and versatility of Tn5-based single cell omics
The analysis of chromatin features in single cells centers around Tn5 transposase and
exploits its activity to simultaneously fragment target DNA and integrate adapter sequences …
exploits its activity to simultaneously fragment target DNA and integrate adapter sequences …
SMARTdb: an integrated database for exploring single-cell multi-omics data of reproductive medicine
Z Liu, Z Yuan, Y Guo, R Wang, Y Guan… - Genomics …, 2024 - academic.oup.com
Single-cell multi-omics sequencing has greatly accelerated reproductive research in recent
years, and the data are continually growing. However, utilizing these data resources is …
years, and the data are continually growing. However, utilizing these data resources is …
Chromatin accessibility analysis suggested vascular induction of the biliary epithelium via the Notch signaling pathway in the human liver
M Yoshihara, T Nakayama, S Takahashi - BMC Research Notes, 2023 - Springer
The biliary epithelial cells (cholangiocytes) in the liver originate from undifferentiated liver
parenchymal cells (hepatoblasts) that are located adjacent to the portal vein. This …
parenchymal cells (hepatoblasts) that are located adjacent to the portal vein. This …
Single-cell chromatin accessibility profiling of cell-state-specific gene regulatory programs during mouse organogenesis
Q Deng, S Wang, Z Huang, Q Lan, G Lai, J Xu… - Frontiers in …, 2023 - frontiersin.org
In mammals, early organogenesis begins soon after gastrulation, accompanied by
specification of various type of progenitor/precusor cells. In order to reveal dynamic …
specification of various type of progenitor/precusor cells. In order to reveal dynamic …
Statistical methods for genomic sequencing data
A Min - 2023 - search.proquest.com
Genomic sequencing data has revolutionized our understanding of the genetic basis of
biological processes. The cost of sequencing the first human genome was estimated to be …
biological processes. The cost of sequencing the first human genome was estimated to be …