Illuminating RNA biology through imaging
RNA processing plays a central role in accurately transmitting genetic information into
functional RNA and protein regulators. To fully appreciate the RNA life-cycle, tools to …
functional RNA and protein regulators. To fully appreciate the RNA life-cycle, tools to …
Aberrant RNA splicing in cancer; expression changes and driver mutations of splicing factor genes
A Sveen, S Kilpinen, A Ruusulehto, RA Lothe… - Oncogene, 2016 - nature.com
Alternative splicing is a widespread process contributing to structural transcript variation and
proteome diversity. In cancer, the splicing process is commonly disrupted, resulting in both …
proteome diversity. In cancer, the splicing process is commonly disrupted, resulting in both …
Single-cell transcriptomics reveals bimodality in expression and splicing in immune cells
Recent molecular studies have shown that, even when derived from a seemingly
homogenous population, individual cells can exhibit substantial differences in gene …
homogenous population, individual cells can exhibit substantial differences in gene …
Spatially resolved transcriptomics and beyond
Considerable progress in sequencing technologies makes it now possible to study the
genomic and transcriptomic landscape of single cells. However, to better understand the …
genomic and transcriptomic landscape of single cells. However, to better understand the …
Single-cell alternative splicing analysis with expedition reveals splicing dynamics during neuron differentiation
Alternative splicing (AS) generates isoform diversity for cellular identity and homeostasis in
multicellular life. Although AS variation has been observed among single cells, little is …
multicellular life. Although AS variation has been observed among single cells, little is …
Transcriptome analysis of human tissues and cell lines reveals one dominant transcript per gene
Background RNA sequencing has opened new avenues for the study of transcriptome
composition. Significant evidence has accumulated showing that the human transcriptome …
composition. Significant evidence has accumulated showing that the human transcriptome …
Kinetic competition during the transcription cycle results in stochastic RNA processing
A Coulon, ML Ferguson, V de Turris, M Palangat… - Elife, 2014 - elifesciences.org
Synthesis of mRNA in eukaryotes involves the coordinated action of many enzymatic
processes, including initiation, elongation, splicing, and cleavage. Kinetic competition …
processes, including initiation, elongation, splicing, and cleavage. Kinetic competition …
Single-molecule imaging of transcriptionally coupled and uncoupled splicing
DY Vargas, K Shah, M Batish, M Levandoski, S Sinha… - Cell, 2011 - cell.com
Introns are removed from pre-mRNAs during transcription while the pre-mRNA is still
tethered to the gene locus via RNA polymerase. However, during alternative splicing, it is …
tethered to the gene locus via RNA polymerase. However, during alternative splicing, it is …
What's luck got to do with it: single cells, multiple fates, and biological nondeterminism
The field of single-cell biology has morphed from a philosophical digression at its inception,
to a playground for quantitative biologists, to a major area of biomedical research. The last …
to a playground for quantitative biologists, to a major area of biomedical research. The last …
Regulation of alternative mRNA splicing: old players and new perspectives
H Dvinge - FEBS letters, 2018 - Wiley Online Library
Nearly all human multiexon genes are subject to alternative splicing in one or more cell
types. The splicing machinery therefore has to select between multiple splice sites in a …
types. The splicing machinery therefore has to select between multiple splice sites in a …