Graph neural networks for materials science and chemistry

P Reiser, M Neubert, A Eberhard, L Torresi… - Communications …, 2022 - nature.com
Abstract Machine learning plays an increasingly important role in many areas of chemistry
and materials science, being used to predict materials properties, accelerate simulations …

Drug discovery with explainable artificial intelligence

J Jiménez-Luna, F Grisoni, G Schneider - Nature Machine Intelligence, 2020 - nature.com
Deep learning bears promise for drug discovery, including advanced image analysis,
prediction of molecular structure and function, and automated generation of innovative …

State-of-the-art augmented NLP transformer models for direct and single-step retrosynthesis

IV Tetko, P Karpov, R Van Deursen, G Godin - Nature communications, 2020 - nature.com
We investigated the effect of different training scenarios on predicting the (retro) synthesis of
chemical compounds using text-like representation of chemical reactions (SMILES) and …

Improving few-and zero-shot reaction template prediction using modern hopfield networks

P Seidl, P Renz, N Dyubankova, P Neves… - Journal of chemical …, 2022 - ACS Publications
Finding synthesis routes for molecules of interest is essential in the discovery of new drugs
and materials. To find such routes, computer-assisted synthesis planning (CASP) methods …

Molecule edit graph attention network: modeling chemical reactions as sequences of graph edits

M Sacha, M Błaz, P Byrski… - Journal of Chemical …, 2021 - ACS Publications
The central challenge in automated synthesis planning is to be able to generate and predict
outcomes of a diverse set of chemical reactions. In particular, in many cases, the most likely …

Recent advances in deep learning for retrosynthesis

Z Zhong, J Song, Z Feng, T Liu, L Jia… - Wiley …, 2024 - Wiley Online Library
Retrosynthesis is the cornerstone of organic chemistry, providing chemists in material and
drug manufacturing access to poorly available and brand‐new molecules. Conventional rule …

Spatial–temporal complex graph convolution network for traffic flow prediction

Y Bao, J Huang, Q Shen, Y Cao, W Ding, Z Shi… - … Applications of Artificial …, 2023 - Elsevier
Traffic flow prediction remains an ongoing hot topic in the field of Intelligent Transportation
System. The state-of-the-art traffic flow prediction models can effectively extract both spatial …

Explainable machine learning for property predictions in compound optimization: miniperspective

R Rodríguez-Pérez, J Bajorath - Journal of medicinal chemistry, 2021 - ACS Publications
The prediction of compound properties from chemical structure is a main task for machine
learning (ML) in medicinal chemistry. ML is often applied to large data sets in applications …

Artificial intelligence in reaction prediction and chemical synthesis

V Venkatasubramanian, V Mann - Current Opinion in Chemical Engineering, 2022 - Elsevier
Recent years have seen a sudden spurt in the use of artificial intelligence (AI) methods for
computational reaction modeling and prediction. Given the diversity of the techniques, we …

Modern machine learning for tackling inverse problems in chemistry: molecular design to realization

B Sridharan, M Goel, UD Priyakumar - Chemical Communications, 2022 - pubs.rsc.org
The discovery of new molecules and materials helps expand the horizons of novel and
innovative real-life applications. In pursuit of finding molecules with desired properties …