Analysis of 1,000 Type-Strain Genomes Improves Taxonomic Classification of Bacteroidetes
M García-López, JP Meier-Kolthoff, BJ Tindall… - Frontiers in …, 2019 - frontiersin.org
Although considerable progress has been made in recent years regarding the classification
of bacteria assigned to the phylum Bacteroidetes, there remains a need to further clarify …
of bacteria assigned to the phylum Bacteroidetes, there remains a need to further clarify …
Environmental superbugs: The case study of Pedobacter spp.
The environment is one of the main reservoirs of antibiotic resistance genes (ARGs) but
multidrug resistant (MDR) environmental isolates are barely characterised. As suggested by …
multidrug resistant (MDR) environmental isolates are barely characterised. As suggested by …
Efficient DNA sequence compression with neural networks
Background The increasing production of genomic data has led to an intensified need for
models that can cope efficiently with the lossless compression of DNA sequences. Important …
models that can cope efficiently with the lossless compression of DNA sequences. Important …
The Unexplored Wealth of Microbial Secondary Metabolites: the Sphingobacteriaceae Case Study
Research on secondary metabolites (SMs) has been mostly focused on Gram-positive
bacteria, especially Actinobacteria. The association of genomics with robust bioinformatics …
bacteria, especially Actinobacteria. The association of genomics with robust bioinformatics …
[HTML][HTML] Characterisation of the bacterial microbiota of a landfill-contaminated confined aquifer undergoing intrinsic remediation
Literature on microbiomes of landfill leachate-contaminated aquifers is scarce despite
groundwater contaminations from landfills being common globally. In this study, a …
groundwater contaminations from landfills being common globally. In this study, a …
Succession, replacement, and modification of chicken litter microbiota
T Kubasova, M Faldynova, M Crhanova… - Applied and …, 2022 - Am Soc Microbiol
Chickens are in constant interaction with their environment, eg, bedding and litter, and their
microbiota. However, how litter microbiota develops over time and whether bedding and …
microbiota. However, how litter microbiota develops over time and whether bedding and …
Selective Isolation of Multidrug-Resistant Pedobacter spp., Producers of Novel Antibacterial Peptides
J Bjerketorp, JJ Levenfors, C Nord, B Guss… - Frontiers in …, 2021 - frontiersin.org
Twenty-eight multidrug-resistant bacterial strains closely related or identical to Pedobacter
cryoconitis, Pedobacter lusitanus and Pedobacter steynii were isolated from soil samples by …
cryoconitis, Pedobacter lusitanus and Pedobacter steynii were isolated from soil samples by …
Membrane lipid adaptation of soil Bacteroidetes isolates to temperature and pH
E Hellequin, S Collin, M Seder-Colomina… - Frontiers in …, 2023 - frontiersin.org
3-hydroxy fatty acids (3-OH FAs) are characteristic components of the Gram-negative
bacterial membrane, recently proposed as promising temperature and pH (paleo) proxies in …
bacterial membrane, recently proposed as promising temperature and pH (paleo) proxies in …
JARVIS2: a data compressor for large genome sequences
Reducing data storage and its associated costs is one of the major bottlenecks in large-
scale genomic projects. In this paper, we present a new method for efficient reference-free …
scale genomic projects. In this paper, we present a new method for efficient reference-free …
The Pangenome of Gram-Negative Environmental Bacteria Hides a Promising Biotechnological Potential
Secondary metabolites (SMs) from environmental bacteria offer viable solutions for various
health and environmental challenges. Researchers are employing advanced bioinformatic …
health and environmental challenges. Researchers are employing advanced bioinformatic …