Application of text mining in the biomedical domain

WWM Fleuren, W Alkema - Methods, 2015 - Elsevier
In recent years the amount of experimental data that is produced in biomedical research and
the number of papers that are being published in this field have grown rapidly. In order to …

Patterns and severity of vincristine‐induced peripheral neuropathy in children with acute lymphoblastic leukemia

EM Lavoie Smith, L Li, CW Chiang… - Journal of the …, 2015 - Wiley Online Library
Vincristine, a critical component of combination chemotherapy treatment for pediatric acute
lymphoblastic leukemia (ALL), can lead to vincristine‐induced peripheral neuropathy …

Biomedical imaging informatics in the era of precision medicine: progress, challenges, and opportunities

W Hsu, MK Markey, MD Wang - Journal of the American Medical …, 2013 - academic.oup.com
Biomedical informatics is the interdisciplinary field that studies and pursues the effective
uses of biomedical data, information, and knowledge for scientific inquiry, problem solving …

[HTML][HTML] Large scale biomedical texts classification: a kNN and an ESA-based approaches

K Dramé, F Mougin, G Diallo - Journal of biomedical semantics, 2016 - Springer
Background With the large and increasing volume of textual data, automated methods for
identifying significant topics to classify textual documents have received a growing interest …

[HTML][HTML] Biomedical imaging ontologies: A survey and proposal for future work

B Smith, S Arabandi, M Brochhausen… - Journal of pathology …, 2015 - Elsevier
Background: Ontology is one strategy for promoting interoperability of heterogeneous data
through consistent tagging. An ontology is a controlled structured vocabulary consisting of …

[HTML][HTML] Semantic concept-enriched dependence model for medical information retrieval

S Choi, J Choi, S Yoo, H Kim, Y Lee - Journal of biomedical informatics, 2014 - Elsevier
Objective In medical information retrieval research, semantic resources have been mostly
used by expanding the original query terms or estimating the concept importance weight …

MeSHSim: An R/Bioconductor package for measuring semantic similarity over MeSH headings and MEDLINE documents

J Zhou, Y Shui, S Peng, X Li… - … of bioinformatics and …, 2015 - World Scientific
Currently, all MEDLINE documents are indexed by medical subject headings (MeSH).
Computing semantic similarity between two MeSH headings as well as two documents has …

Trends in biomedical informatics: automated topic analysis of JAMIA articles

D Han, S Wang, C Jiang, X Jiang… - Journal of the …, 2015 - academic.oup.com
Biomedical Informatics is a growing interdisciplinary field in which research topics and
citation trends have been evolving rapidly in recent years. To analyze these data in a fast …

[PDF][PDF] Query Expansion using External Resources for Improving Information Retrieval in the Biomedical Domain.

K Dramé, F Mougin, G Diallo - CLEF (Working Notes), 2014 - Citeseer
This paper presents the first participation of the ERIAS team in task 3 of the ShARe/CLEF
eHealth Evaluation Lab 2014. The goal of this task is to evaluate the effectiveness of …

[HTML][HTML] Automatically finding relevant citations for clinical guideline development

DDA Bui, S Jonnalagadda, G Del Fiol - Journal of biomedical informatics, 2015 - Elsevier
Objective Literature database search is a crucial step in the development of clinical practice
guidelines and systematic reviews. In the age of information technology, the process of …