In situ nucleic acid sequencing of expanded biological samples

ES Boyden, F Chen, S Alon, G Church… - US Patent …, 2018 - Google Patents
The invention provides in situ nucleic acid sequencing to be conducted in biological
specimens that have been physically expanded. The invention leverages the techniques for …

Nucleic acid sequencing

T Hauling, M Kühnemund - US Patent 11,352,667, 2022 - Google Patents
A nucleic acid sequencing method involving contacting a spatially defined target nucleic
acid sequence with N labeled oligonucleotide probes and performing measurements, at …

Nanoscale imaging of proteins and nucleic acids via expansion microscopy

A Wassie, F Chen, ES Boyden, S Alon… - US Patent …, 2019 - Google Patents
The invention enables in situ genomic and transcriptomic assessment of nucleic acids to be
conducted in biological specimens that have been physically expanded. The invention …

Protein retention expansion microscopy

PW Tillberg, F Chen, ES Boyden… - US Patent …, 2019 - Google Patents
The invention provides a method termed protein retention ExM (proExM), in which proteins,
rather than labels, are anchored to the swellable gel, using a cross-linking molecule. This …

Iterative expansion microscopy

ES Boyden, JB Chang, F Chen, PW Tillberg - US Patent 11,408,890, 2022 - Google Patents
The present invention leverages the techniques for expansion microscopy (ExM) to provide
improved high-throughput super-resolution whole-organ imaging methodology to image …

In situ ATAC sequencing

F Chen, AC Payne, JD Buenrostro, P Reginato… - US Patent …, 2021 - Google Patents
The present invention provides methods for analyzing polynucleotides such as genomic
DNA. In some embodiments, the disclosure provides a method for preparing and amplifying …

Spatially distinguished, multiplex nucleic acid analysis of biological specimens

J Frisen, P Stahl, J Lundeberg, GM Cann… - US Patent …, 2023 - Google Patents
First worldwide family litigation filed litigation Critical https://patents. darts-ip. com/? family=
55963288&utm_source= google_patent&utm_medium= platform_link&utm_campaign …

Augmenting in situ nucleic acid sequencing of expanded biological samples with in vitro sequence information

F Chen, S Alon, A Payne, A Wassie… - US Patent …, 2020 - Google Patents
2005/0034990 Al 2005/0090016 A1 2005/0169962 A1 2005/0196702 A1 2006/0000767 Al
2006/0003356 A1 2006/0110760 Al 2006/0115146 Al 2006/0165912 A1 2007/0023942 A1 …

Spatially distinguished, multiplex nucleic acid analysis of biological specimens

J Frisen, P Stahl, J Lundeberg, GM Cann… - US Patent …, 2023 - Google Patents
A method for spatially tagging nucleic acids of a biological specimen, including steps of (a)
providing a solid support comprising different nucleic acid probes that are randomly located …

Methods for internally controlled in situ assays using padlock probes

FA Bava - US Patent 12,060,603, 2024 - Google Patents
JLCPHMBAVCMARE-UHFFFAOYSA-N [3-[[3-[[3-[[3-[[3-[[3-[[3-[[3-[[3-[[3-[[3-[[5-(2-amino-6-
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