Theory and simulation of the ultrafast double-bond isomerization of biological chromophores

S Gozem, HL Luk, I Schapiro, M Olivucci - Chemical reviews, 2017 - ACS Publications
Ultrafast processes in light-absorbing proteins have been implicated in the primary step in
the light-to-energy conversion and the initialization of photoresponsive biological functions …

Photoinduced chemistry in fluorescent proteins: curse or blessing?

A Acharya, AM Bogdanov, BL Grigorenko… - Chemical …, 2017 - ACS Publications
Photoinduced reactions play an important role in the photocycle of fluorescent proteins from
the green fluorescent protein (GFP) family. Among such processes are photoisomerization …

Optical control of ultrafast structural dynamics in a fluorescent protein

CDM Hutchison, JM Baxter, A Fitzpatrick, G Dorlhiac… - Nature …, 2023 - nature.com
The photoisomerization reaction of a fluorescent protein chromophore occurs on the ultrafast
timescale. The structural dynamics that result from femtosecond optical excitation have …

Chromophore twisting in the excited state of a photoswitchable fluorescent protein captured by time-resolved serial femtosecond crystallography

N Coquelle, M Sliwa, J Woodhouse, G Schirò… - Nature Chemistry, 2018 - nature.com
Chromophores absorb light in photosensitive proteins and thereby initiate fundamental
biological processes such as photosynthesis, vision and biofluorescence. An important goal …

Reversible hydrogels with tunable mechanical properties for optically controlling cell migration

X Wu, W Huang, WH Wu, B Xue, D Xiang, Y Li, M Qin… - Nano Research, 2018 - Springer
Synthetic hydrogels are widely used as biomimetic in vitro model systems to understand
how cells respond to complex microenvironments. The mechanical properties of hydrogels …

Chemistry of photosensitive fluorophores for single-molecule localization microscopy

FM Jradi, LD Lavis - ACS Chemical Biology, 2019 - ACS Publications
Development of single-molecule localization microscopy (SMLM) has sparked a revolution
in biological imaging, allowing “super-resolution” fluorescence microscopy below the …

Photoreversible on–off recording of persistent room‐temperature phosphorescence

Y Katsurada, S Hirata, K Totani… - Advanced Optical …, 2015 - Wiley Online Library
Photoreversible on–off recording of red persistent room‐temperature phosphorescence
(RTP) is demonstrated. Host–guest materials composed of a persistent phosphorescent …

Photoswitching mechanism of a fluorescent protein revealed by time-resolved crystallography and transient absorption spectroscopy

J Woodhouse, G Nass Kovacs, N Coquelle… - Nature …, 2020 - nature.com
Reversibly switchable fluorescent proteins (RSFPs) serve as markers in advanced
fluorescence imaging. Photoswitching from a non-fluorescent off-state to a fluorescent on …

A guide to time‐resolved structural analysis of light‐activated proteins

H Poddar, DJ Heyes, G Schirò, M Weik… - The FEBS …, 2022 - Wiley Online Library
Dynamical changes in protein structures are essential for protein function and occur over
femtoseconds to seconds timescales. X‐ray free electron lasers have facilitated …

Data analysis in transient electronic spectroscopy–an experimentalist's view

JS Beckwith, CA Rumble, E Vauthey - International Reviews in …, 2020 - Taylor & Francis
Time-resolved electronic spectroscopy has grown into a technique that provides hundreds to
thousands of electronic spectra with femtosecond time resolution. This enables complex …